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Ssr4 Gene Detail
Summary
  • Symbol
    Ssr4
  • Name
    signal sequence receptor, delta
  • Synonyms
    Trap
  • Feature Type
    protein coding gene
  • IDs
    MGI:1099464
    NCBI Gene: 20832
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:72830778-72834432 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 37.41 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    108 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1099464
 protein coding gene ChrX:72830634-72834436 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035821
 protein coding gene ChrX:69562318-69566120 (+)
A/J MGP_AJ_G0035802
 protein coding gene ChrX:69759289-69763091 (+)
AKR/J MGP_AKRJ_G0035727
 protein coding gene ChrX:71579926-71583728 (+)
BALB/cJ MGP_BALBcJ_G0035787
 protein coding gene ChrX:68790638-68794440 (+)
C3H/HeJ MGP_C3HHeJ_G0035492
 protein coding gene ChrX:70035881-70039683 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036317
 protein coding gene ChrX:71692866-71696668 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033161
 protein coding gene ChrX:68789905-68793712 (+)
CAST/EiJ MGP_CASTEiJ_G0034783
 protein coding gene ChrX:55381885-55385683 (+)
CBA/J MGP_CBAJ_G0035467
 protein coding gene ChrX:73671816-73675618 (+)
DBA/2J MGP_DBA2J_G0035624
 protein coding gene ChrX:69217430-69221232 (+)
FVB/NJ MGP_FVBNJ_G0035568
 protein coding gene ChrX:68548499-68552301 (+)
LP/J MGP_LPJ_G0035709
 protein coding gene ChrX:70344893-70348695 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035606
 protein coding gene ChrX:76241397-76245204 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036339
 protein coding gene ChrX:69383671-69387473 (+)
PWK/PhJ MGP_PWKPhJ_G0034482
 protein coding gene ChrX:53397738-53401536 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034316
 protein coding gene ChrX:56285148-56288946 (+)
WSB/EiJ MGP_WSBEiJ_G0034924
 protein coding gene ChrX:68657543-68661344 (+)



Homology
more
  • Human Ortholog
    SSR4, signal sequence receptor subunit 4
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SSR4, signal sequence receptor subunit 4
  • Synonyms
    CDG1Y, TRAPD
  • Links
    NCBI Gene ID: 6748
    neXtProt AC: NX_P51571
    UniProt: P51571

  • Chr Location
    Xq28; chrX:153793516-153798512 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with human SSR4 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    4
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    970
  • Tissues
    19
  • cDNA Data
    159
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 20832 NCBI Gene Model | MGI Sequence Detail 3655 C57BL/6J ±  kb
transcript NM_001358213 RefSeq | MGI Sequence Detail 757 C57BL/6  
polypeptide Q62186 UniProt | EBI | MGI Sequence Detail 172 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 161
    Genomic 1
    cDNA 159
    Other 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:2148027, MGI:2148055
References
more
  • Summaries
    All 34
    Developmental Gene Expression 1
    Gene Ontology 4
    Phenotypes 6
  • Earliest
    J:42694 Holthuis JC, et al., Translocon-associated protein TRAP delta and a novel TRAP-like protein are coordinately expressed with pro-opiomelanocortin in Xenopus intermediate pituitary. Biochem J. 1995 Nov 15;312(Pt 1):205-13
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory