Ccnd3-ps Pseudogene Detail

Summary

• Symbol
  Ccnd3-ps
• Name
  cyclin D3, pseudogene

• Feature Type
  pseudogene
• IDs
  MGI:1100505
  NCBI Gene: 626000
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:139072611-139073491 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 70.65 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  152 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1100505	pseudogene	Chr4:139071703-139073626 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012916	pseudogene	Chr4:142177785-142178665 (-)
A/J	MGP_AJ_G0012903	pseudogene	Chr4:136062529-136063409 (-)
AKR/J	MGP_AKRJ_G0012871	pseudogene	Chr4:139960960-139961828 (-)
BALB/cJ	MGP_BALBcJ_G0012877	pseudogene	Chr4:136735892-136736760 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0013219	pseudogene	Chr4:147206943-147207823 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010186	pseudogene	Chr17:44298462-44303556 (+)
CAST/EiJ	MGP_CASTEiJ_G0012481	pseudogene	Chr4:138525977-138526734 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0012781	pseudogene	Chr4:135485754-135486622 (-)
LP/J	MGP_LPJ_G0012849	pseudogene	Chr4:142249555-142250435 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012795	pseudogene	Chr4:155363307-155364187 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013236	pseudogene	Chr4:140489138-140490018 (-)
PWK/PhJ	MGP_PWKPhJ_G0012303	pseudogene	Chr4:133307677-133308425 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012117	pseudogene	Chr4:136268239-136269117 (-)
WSB/EiJ	MGP_WSBEiJ_G0012509	pseudogene	Chr4:140739572-140745047 (-)

Homology

• Gene Tree
  Ccnd3-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Ccnd3-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000080708 (Evidence)
• NCBI Gene
  626000

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080708	Ensembl Gene Model | MGI Sequence Detail	881	C57BL/6J
transcript	ENSMUST00000117963	Ensembl | MGI Sequence Detail	881	Not Applicable

Molecular
Reagents

• All nucleic 9

  Genomic 6

  cDNA 3

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:40540 Jun DY, et al., Isolation and characterization of a processed pseudogene for murine cyclin D3. Mol Cells. 1997 Apr 30;7(2):278-83

TSS for Ccnd3-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr44225	Chr4:139073306-139073331 (-)	172 bp