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Capn5 Gene Detail
Summary
  • Symbol
    Capn5
  • Name
    calpain 5
  • Feature Type
    protein coding gene
  • IDs
    MGI:1100859
    NCBI Gene: 12337
  • Alliance
    gene page
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:97770766-97827481 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 53.57 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1809 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1100859
 protein coding gene Chr7:97770766-97828148 (-)
129S1/SvImJ MGP_129S1SvImJ_G0032534
 protein coding gene Chr7:100848935-100906303 (-)
A/J MGP_AJ_G0032508
 protein coding gene Chr7:98356861-98412104 (-)
AKR/J MGP_AKRJ_G0032444
 protein coding gene Chr7:100693246-100753665 (-)
BALB/cJ MGP_BALBcJ_G0032519
 protein coding gene Chr7:98045624-98103120 (-)
C3H/HeJ MGP_C3HHeJ_G0032234
 protein coding gene Chr7:101048599-101110182 (-)
C57BL/6NJ MGP_C57BL6NJ_G0033017
 protein coding gene Chr7:104760981-104819759 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0030012
 protein coding gene Chr7:100804145-100865774 (-)
CAST/EiJ MGP_CASTEiJ_G0031561
 protein coding gene Chr7:92557503-92624943 (-)
CBA/J MGP_CBAJ_G0032201
 protein coding gene Chr7:108308095-108377648 (-)
DBA/2J MGP_DBA2J_G0032353
 protein coding gene Chr7:96688420-96749394 (-)
FVB/NJ MGP_FVBNJ_G0032309
 protein coding gene Chr7:96494902-96554368 (-)
LP/J MGP_LPJ_G0032442
 protein coding gene Chr7:102165336-102227349 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0032342
 protein coding gene Chr7:109854313-109912985 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0033039
 protein coding gene Chr7:99969766-100027174 (-)
PWK/PhJ MGP_PWKPhJ_G0031279
 protein coding gene Chr7:89758655-89820033 (-)
SPRET/EiJ MGP_SPRETEiJ_G0031122
 protein coding gene Chr7:87231899-87292444 (-)
WSB/EiJ MGP_WSBEiJ_G0031678
 protein coding gene Chr7:100603961-100672104 (-)



Homology
more
  • Human Ortholog
    CAPN5, calpain 5
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CAPN5, calpain 5
  • Synonyms
    ADNIV, HTRA3, nCL-3, VRNI
  • Links
    NCBI Gene ID: 726
    neXtProt AC: NX_O15484
    UniProt: O15484

  • Chr Location
    11q13.5; chr11:77066961-77126155 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with human CAPN5 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotypes from 3 alleles in 3 genetic backgrounds
    21 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for one allele of this gene occasionally exhibit reduced viability but are usually normal. Homozygotes for another allele die as embryos.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    9
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    885
  • Tissues
    95
  • cDNA Data
    68
  • Literature Summary
    6
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000035547 Ensembl Gene Model | MGI Sequence Detail 56716 C57BL/6J ±  kb
    transcript ENSMUST00000107112 Ensembl | MGI Sequence Detail 2232 Not Applicable  
    polypeptide ENSMUSP00000102729 Ensembl | MGI Sequence Detail 640 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 73
      Genomic 1
      cDNA 68
      Primer pair 4

      Microarray probesets 4
    References
    more
    • Summaries
      All 55
      Developmental Gene Expression 6
      Gene Ontology 7
      Phenotypes 21
    • Earliest
      J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory