H3f3a-ps1 Pseudogene Detail

Summary

• Symbol
  H3f3a-ps1
• Name
  H3.3 histone A, pseudogene 1
• Synonyms
  H3.3-like sequence MH321

• Feature Type
  pseudogene
• IDs
  MGI:1101782
  NCBI Gene: 15079
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:100868121-100868530 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 44.71 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  50 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1101782	pseudogene	ChrX:100868031-100868893 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  H3f3a-ps1
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  1

• Ensembl
  ENSMUSG00000082284 (Evidence)
• NCBI Gene
  15079

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082284	Ensembl Gene Model | MGI Sequence Detail	410	C57BL/6J
transcript	ENSMUST00000119546	Ensembl | MGI Sequence Detail	410	Not Applicable

Molecular
Reagents

• All nucleic 4

  Genomic 4

References

• Summaries
  All 7
• Earliest
  J:9050 Wellman SE, et al., Characterization of mouse H3.3-like histone genes. Gene. 1987;59(1):29-39
• Latest
  J:224673 Maehara K, et al., Tissue-specific expression of histone H3 variants diversified after species separation. Epigenetics Chromatin. 2015;8:35