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Carhsp1 Gene Detail
Summary
  • Symbol
    Carhsp1
  • Name
    calcium regulated heat stable protein 1
  • Synonyms
    1200011K09Rik, D16Ertd465e
  • Feature Type
    protein coding gene
  • IDs
    MGI:1196368
    NCBI Gene: 52502
  • Alliance
    gene page
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:8476444-8490017 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 4.26 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    414 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1196368
 protein coding gene Chr16:8476444-8490019 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022497
 protein coding gene Chr16:5327038-5340604 (-)
A/J MGP_AJ_G0022459
 protein coding gene Chr16:5013194-5028444 (-)
AKR/J MGP_AKRJ_G0022435
 protein coding gene Chr16:5290369-5306329 (-)
BALB/cJ MGP_BALBcJ_G0022463
 protein coding gene Chr16:5184197-5197763 (-)
C3H/HeJ MGP_C3HHeJ_G0022230
 protein coding gene Chr16:5327396-5341764 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022912
 protein coding gene Chr16:5476287-5490180 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020433
 protein coding gene Chr16:5212429-5225901 (-)
CAST/EiJ MGP_CASTEiJ_G0021757
 protein coding gene Chr16:5347661-5361197 (-)
CBA/J MGP_CBAJ_G0022199
 protein coding gene Chr16:5682866-5696432 (-)
DBA/2J MGP_DBA2J_G0022330
 protein coding gene Chr16:5060473-5074083 (-)
FVB/NJ MGP_FVBNJ_G0022306
 protein coding gene Chr16:5041817-5057529 (-)
LP/J MGP_LPJ_G0022398
 protein coding gene Chr16:5300914-5314672 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022328
 protein coding gene Chr16:5473856-5487414 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022925
 protein coding gene Chr16:5240303-5253789 (-)
PWK/PhJ MGP_PWKPhJ_G0021497
 protein coding gene Chr16:5232349-5246016 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021327
 protein coding gene Chr16:5296741-5310321 (-)
WSB/EiJ MGP_WSBEiJ_G0021805
 protein coding gene Chr16:5275271-5289517 (-)



Homology
more
  • Human Ortholog
    CARHSP1, calcium regulated heat stable protein 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CARHSP1, calcium regulated heat stable protein 1
  • Synonyms
    CRHSP-24, CRHSP24, CSDC1
  • Links
    NCBI Gene ID: 23589
    neXtProt AC: NX_Q9Y2V2
    UniProt: Q9Y2V2

  • Chr Location
    16p13.2; chr16:8852942-8869012 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    11
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    744
  • Tissues
    32
  • cDNA Data
    26
  • Literature Summary
    7
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 52502 NCBI Gene Model | MGI Sequence Detail 13574 C57BL/6J ±  kb
transcript NM_025821 RefSeq | MGI Sequence Detail 2849 ZRU/MplStud  
polypeptide Q9CR86 UniProt | EBI | MGI Sequence Detail 148 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 27
    cDNA 26
    Primer pair 1

    Microarray probesets 6
Other
Accession IDs
less
MGI:1914129
References
more
  • Summaries
    All 42
    Developmental Gene Expression 7
    Gene Ontology 6
    Phenotypes 10
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
  • Latest
    J:205051 Miller JA, et al., Conserved molecular signatures of neurogenesis in the hippocampal subgranular zone of rodents and primates. Development. 2013 Nov;140(22):4633-44
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory