Prdx6-ps2 Pseudogene Detail

Summary

• Symbol
  Prdx6-ps2
• Name
  peroxiredoxin 6 pseudogene 2
• Synonyms
  Aop2-rs2, GPx*, Prdx6-rs2

• Feature Type
  pseudogene
• IDs
  MGI:1203519
  NCBI Gene: 384001
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:25307830-25308523 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 10.59 cM
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  18
• PCR
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1203519	pseudogene	Chr4:25307777-25309139 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012561	pseudogene	Chr4:22399184-22399877 (+)
A/J	MGP_AJ_G0012552	pseudogene	Chr4:21757959-21758652 (+)
AKR/J	MGP_AKRJ_G0012519	pseudogene	Chr4:22237935-22238628 (+)
BALB/cJ	MGP_BALBcJ_G0012538	pseudogene	Chr4:21813064-21813757 (+)
C3H/HeJ	MGP_C3HHeJ_G0012400	pseudogene	Chr4:22437519-22438212 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012853	pseudogene	Chr4:23392081-23392774 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010499	pseudogene	Chr2:74970009-74970683 (+)
CAST/EiJ	MGP_CASTEiJ_G0012157	pseudogene	Chr4:22155176-22155875 (+)
CBA/J	MGP_CBAJ_G0012378	pseudogene	Chr4:24007932-24008625 (+)
DBA/2J	MGP_DBA2J_G0012432	pseudogene	Chr4:21669295-21669988 (+)
FVB/NJ	MGP_FVBNJ_G0012435	pseudogene	Chr4:21292962-21293655 (+)
LP/J	MGP_LPJ_G0012506	pseudogene	Chr4:22531887-22532580 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012441	pseudogene	Chr4:25512410-25513103 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012854	pseudogene	Chr4:22210113-22210806 (+)
PWK/PhJ	MGP_PWKPhJ_G0011988	pseudogene	Chr4:21350863-21351556 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011808	pseudogene	Chr4:22006634-22007333 (+)
WSB/EiJ	MGP_WSBEiJ_G0012182	pseudogene	Chr4:22170826-22171519 (+)

Homology

• Gene Tree
  Prdx6-ps2
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000083737 (Evidence)
• NCBI Gene
  384001

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083737	Ensembl Gene Model | MGI Sequence Detail	694	C57BL/6J
transcript	ENSMUST00000121989	Ensembl | MGI Sequence Detail	694	Not Applicable

Molecular
Reagents

• All nucleic 5

  Genomic 1

  cDNA 1

  Primer pair 3

Other
Accession IDs

MGI:1859818

References

• Summaries
  All 11
• Earliest
  J:54513 Munz B, et al., A novel type of glutathione peroxidase: expression and regulation during wound repair. Biochem J. 1997 Sep 1;326(Pt 2):579-85
• Latest
  J:89933 Kudo T, et al., Normal embryonic and germ cell development in mice lacking alpha 1,3-fucosyltransferase IX (Fut9) which show disappearance of stage-specific embryonic antigen 1. Mol Cell Biol. 2004 May;24(10):4221-8

TSS for Prdx6-ps2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1128	Chr4:25307773-25307784 (+)	-51 bp