Stbd1 MGI Mouse Gene Detail - MGI:1261768

Symbol

Stbd1
Name

starch binding domain 1
Synonyms

D530019K15Rik, D5Ertd593e

Feature Type

protein coding gene
IDs

MGI:1261768
NCBI Gene: 52331
Alliance

gene page
Transcription Start Sites

2 TSS

Sequence Map

Chr5:92750910-92754438 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 5, 47.21 cM
Mapping Data

3 experiments

SNPs within 2kb

177 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1261768	protein coding gene	Chr5:92750900-92754438 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0029754	protein coding gene	Chr5:93794019-93799667 (+)
A/J	MGP_AJ_G0029720	protein coding gene	Chr5:90064709-90068246 (+)
AKR/J	MGP_AKRJ_G0029666	protein coding gene	Chr5:93032953-93038164 (+)
BALB/cJ	MGP_BALBcJ_G0029730	protein coding gene	Chr5:90942094-90948406 (+)
C3H/HeJ	MGP_C3HHeJ_G0029453	protein coding gene	Chr5:93414829-93419959 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0030184	protein coding gene	Chr5:97507030-97510563 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0027420	protein coding gene	Chr5:85698547-85702104 (+)
CAST/EiJ	MGP_CASTEiJ_G0028863	protein coding gene	Chr5:92796757-92800267 (+)
CBA/J	MGP_CBAJ_G0029423	protein coding gene	Chr5:100913864-100918527 (+)
DBA/2J	MGP_DBA2J_G0029567	protein coding gene	Chr5:90110181-90114495 (+)
FVB/NJ	MGP_FVBNJ_G0029526	protein coding gene	Chr5:88965780-88969585 (+)
LP/J	MGP_LPJ_G0029655	protein coding gene	Chr5:94155501-94159090 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0029555	protein coding gene	Chr5:105805758-105814079 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0030218	protein coding gene	Chr5:92545133-92548681 (+)
PWK/PhJ	MGP_PWKPhJ_G0028582	protein coding gene	Chr5:89171568-89175364 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0028417	protein coding gene	Chr5:91889714-91893241 (+)
WSB/EiJ	MGP_WSBEiJ_G0028942	protein coding gene	Chr5:93008201-93011740 (+)

Human Ortholog

STBD1, starch binding domain 1

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

STBD1, starch binding domain 1
Synonyms

GENEX3414, GENX-3414
Links

HGNC:24854

NCBI Gene ID: 8987

neXtProt AC: NX_O95210

UniProt: O95210
Chr Location

4q21.1; chr4:76306733-76311130 (+) GRCh38

MGI Vertebrate Homology

Stbd1 stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: STBD1
Gene Tree

Stbd1

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Phenotype Summary

2 phenotypes from 2 alleles in 2 genetic backgrounds
4 phenotypes from multigenic genotypes
15 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

9
Chemically induced (other)

1
Endonuclease-mediated

2
Radiation induced

1
Spontaneous

1
Targeted

4
Genomic Mutations

3 involving Stbd1
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

14 strains or lines available

Mice homozygous for a knock-out allele show normal fasting glycogen levels in heart, skeletal muscle, and liver tissues.

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All GO Annotations

25
GO References

9

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

786
Tissues

29
cDNA Data

13
Literature Summary

3

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase stbd1

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All Sequences

43
RefSeq

2
UniProt

3
CCDS

CCDS19433.1

Ensembl

ENSMUSG00000047963 (Evidence)
NCBI Gene

52331

			Length	Strain/Species	Flank
genomic	52331	NCBI Gene Model \| MGI Sequence Detail	3529	C57BL/6J	± kb
transcript	NM_175096	RefSeq \| MGI Sequence Detail	1985	ZRU/MplStud
polypeptide	Q8C7E7	UniProt \| EBI \| MGI Sequence Detail	338	Not Applicable

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UniProt

3 Sequences
Protein Ontology

PR:000029772 starch-binding domain-containing protein 1

(term hierarchy)
InterPro Domains

IPR013784 Carbohydrate-binding-like fold

IPR002044 Carbohydrate binding module family 20

IPR013783 Immunoglobulin-like fold

IPR034838 Starch-binding domain-containing protein 1, CBM20 domain

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All nucleic 15

cDNA 13

Primer pair 2

Microarray probesets 3

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MGI:1915506

Summaries

All 49

Developmental Gene Expression 3

Gene Ontology 9

Phenotypes 15
Earliest

J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
Latest

J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

TSS for Stbd1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47320	Chr5:92750898-92750909 (+)	-6 bp
Tssr47321	Chr5:92750935-92750968 (+)	42 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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