Cideb MGI Mouse Gene Detail - MGI:1270844 - cell death-inducing DNA fragmentation factor, alpha subunit-like effector B

Symbol

Cideb
Name

cell death-inducing DNA fragmentation factor, alpha subunit-like effector B
Synonyms

1110030C18Rik, CIDE-B, DFFA-like B

Feature Type

protein coding gene
IDs

MGI:1270844
NCBI Gene: 12684
Alliance

gene page
Transcription Start Sites

8 TSS

Sequence Map

Chr14:55991509-55995881 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 14, 28.19 cM, cytoband C1
Mapping Data

3 experiments

SNPs within 2kb

163 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1270844	protein coding gene	Chr14:55991507-55995915 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0021368	protein coding gene	Chr14:49796502-49800915 (-)
A/J	MGP_AJ_G0021327	protein coding gene	Chr14:48807803-48812216 (-)
AKR/J	MGP_AKRJ_G0021303	protein coding gene	Chr14:50558414-50562827 (-)
BALB/cJ	MGP_BALBcJ_G0021331	protein coding gene	Chr14:48773528-48777940 (-)
C3H/HeJ	MGP_C3HHeJ_G0021111	protein coding gene	Chr14:50239792-50247764 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0021769	protein coding gene	Chr14:52290043-52294456 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0019316	protein coding gene	Chr14:47177411-47181837 (-)
CAST/EiJ	MGP_CASTEiJ_G0020630	protein coding gene	Chr14:46507119-46511526 (-)
CBA/J	MGP_CBAJ_G0021078	protein coding gene	Chr14:53857337-53861750 (-)
DBA/2J	MGP_DBA2J_G0021199	protein coding gene	Chr14:48527342-48531760 (-)
FVB/NJ	MGP_FVBNJ_G0021181	protein coding gene	Chr14:47974934-47979732 (-)
LP/J	MGP_LPJ_G0021273	protein coding gene	Chr14:50846812-50851191 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0021205	protein coding gene	Chr14:53213575-53217987 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0021796	protein coding gene	Chr14:49740679-49745092 (-)
PWK/PhJ	MGP_PWKPhJ_G0020377	protein coding gene	Chr14:45061334-45065764 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0020205	protein coding gene	Chr14:45747334-45751387 (-)
WSB/EiJ	MGP_WSBEiJ_G0020683	protein coding gene	Chr14:50025313-50029727 (-)

Human Ortholog

CIDEB, cell death inducing DFFA like effector b

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

CIDEB, cell death inducing DFFA like effector b
Links

HGNC:1977

NCBI Gene ID: 27141

neXtProt AC: NX_Q9UHD4

UniProt: Q9UHD4
Chr Location

14q12; chr14:24305187-24311435 (-) GRCh38

MGI Vertebrate Homology

Cideb stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: CIDEB
Gene Tree

Cideb

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Phenotype Summary

14 phenotypes from 1 allele in 1 genetic background
14 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

5
Chemically induced (other)

1
Endonuclease-mediated

2
Targeted

2
Genomic Mutations

1 involving Cideb
Incidental Mutations

APF
Find Mice (IMSR)

19 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

Mice homozygous for a knock-out allele display a lean phenotype, increased energy expenditure and improved insulin sensitivity and are resistant to high-fat diet-induced obesity, hyperlipidemia, or liver steatosis.

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All GO Annotations

29
GO References

13

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

800
Tissues

90
cDNA Data

74
Literature Summary

5

Images

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase cideb

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All Sequences

35
RefSeq

2
UniProt

2
CCDS

CCDS27127.1

Ensembl

ENSMUSG00000022219 (Evidence)
NCBI Gene

12684

			Length	Strain/Species	Flank
genomic	12684	NCBI Gene Model \| MGI Sequence Detail	4373	C57BL/6J	± kb
transcript	NM_009894	RefSeq \| MGI Sequence Detail	1186	C57BL/6
polypeptide	O70303	UniProt \| EBI \| MGI Sequence Detail	219	Not Applicable

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UniProt

2 Sequences
Protein Ontology

PR:000005493 lipid transferase CIDEB

(term hierarchy)
InterPro Domains

IPR003508 CIDE-N domain

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All nucleic 75

cDNA 74

Primer pair 1

Microarray probesets 3

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MGI:1915915, MGI:2145691

Summaries

All 48

Developmental Gene Expression 5

Gene Ontology 13

Phenotypes 14
Earliest

J:47647 Inohara N, et al., CIDE, a novel family of cell death activators with homology to the 45 kDa subunit of the DNA fragmentation factor. EMBO J. 1998 May 1;17(9):2526-33
Latest

J:285677 Su L, et al., Cideb controls sterol-regulated ER export of SREBP/SCAP by promoting cargo loading at ER exit sites. EMBO J. 2019 Apr 15;38(8)

TSS for Cideb:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr128884	Chr14:55995920-55995946 (-)	-52 bp
Tssr4434	Chr14:55995912-55995917 (-)	-34 bp
Tssr4433	Chr14:55995895-55995902 (-)	-18 bp
Tssr128883	Chr14:55995800-55995893 (-)	34 bp
Tssr128882	Chr14:55995788-55995799 (-)	87 bp
Tssr128881	Chr14:55995765-55995770 (-)	113 bp
Tssr4432	Chr14:55995427-55995445 (-)	445 bp
Tssr128880	Chr14:55991911-55991939 (-)	3,956 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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