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Ccdc43 Gene Detail
Summary
  • Symbol
    Ccdc43
  • Name
    coiled-coil domain containing 43
  • Synonyms
    2610001E01Rik, D11Ertd707e
  • Feature Type
    protein coding gene
  • IDs
    MGI:1289318
    NCBI Gene: 52715
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:102575512-102588608 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 66.48 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    365 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1289318
 protein coding gene Chr11:102575510-102595829 (-)
129S1/SvImJ MGP_129S1SvImJ_G0019242
 protein coding gene Chr11:105692065-105706678 (-)
A/J MGP_AJ_G0019210
 protein coding gene Chr11:101219164-101232838 (-)
AKR/J MGP_AKRJ_G0019179
 protein coding gene Chr11:104355945-104368947 (-)
BALB/cJ MGP_BALBcJ_G0019184
 protein coding gene Chr11:101702003-101715356 (-)
C3H/HeJ MGP_C3HHeJ_G0018993
 protein coding gene Chr11:104557734-104570796 (-)
C57BL/6NJ MGP_C57BL6NJ_G0019633
 protein coding gene Chr11:108977674-108992633 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0017259
 protein coding gene Chr11:98650988-98664548 (-)
CAST/EiJ MGP_CASTEiJ_G0018547
 protein coding gene Chr11:105562932-105576790 (-)
CBA/J MGP_CBAJ_G0018962
 protein coding gene Chr11:113474551-113490801 (-)
DBA/2J MGP_DBA2J_G0019074
 protein coding gene Chr11:100734440-100748198 (-)
FVB/NJ MGP_FVBNJ_G0019064
 protein coding gene Chr11:100276733-100289808 (-)
LP/J MGP_LPJ_G0019143
 protein coding gene Chr11:106215495-106228734 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0019095
 protein coding gene Chr11:112951286-112964359 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0019671
 protein coding gene Chr11:104725681-104741044 (-)
PWK/PhJ MGP_PWKPhJ_G0018310
 protein coding gene Chr11:101813942-101848280 (-)
SPRET/EiJ MGP_SPRETEiJ_G0018102
 protein coding gene Chr11:104479293-104492143 (-)
WSB/EiJ MGP_WSBEiJ_G0018596
 protein coding gene Chr11:104719732-104734087 (-)



Homology
more
  • Human Ortholog
    CCDC43, coiled-coil domain containing 43
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCDC43, coiled-coil domain containing 43
  • Links
    NCBI Gene ID: 124808
    neXtProt AC: NX_Q96MW1
    UniProt: Q96MW1

  • Chr Location
    17q21.31; chr17:44673069-44689779 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    719
  • Tissues
    11
  • cDNA Data
    47
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000020925 Ensembl Gene Model | MGI Sequence Detail 13097 C57BL/6J ±  kb
transcript ENSMUST00000092569 Ensembl | MGI Sequence Detail 2366 Not Applicable  
polypeptide ENSMUSP00000090230 Ensembl | MGI Sequence Detail 222 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000029330 coiled-coil domain-containing protein 43
    (term hierarchy)
  • InterPro Domains
    IPR037666 Coiled-coil domain-containing protein 43
  • GlyGen
    Q9CR29 1 site, 1 N-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 49
    cDNA 48
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:1914274
References
more
  • Summaries
    All 34
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 11
  • Earliest
    J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
  • Latest
    J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory