Amd-ps1 Pseudogene Detail

Summary

• Symbol
  Amd-ps1
• Name
  S-adenosylmethionine decarboxylase, pseudogene 1
• Synonyms
  AMD3

• Feature Type
  pseudogene
• IDs
  MGI:1310005
  NCBI Gene: 11701
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:153938191-153939184 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 72.38 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1310005	pseudogene	ChrX:153937867-153941046 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014123	pseudogene	Chr9:22218819-22219812 (-)
A/J	MGP_AJ_G0014937	pseudogene	ChrX:152320587-152322241 (+)
AKR/J	MGP_AKRJ_G0014878	pseudogene	ChrX:157132742-157133864 (+)
BALB/cJ	MGP_BALBcJ_G0011433	pseudogene	Chr18:61868190-61869626 (-)
C3H/HeJ	MGP_C3HHeJ_G0014729	pseudogene	ChrX:153369890-153372683 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012944	pseudogene	Chr4:51581206-51582762 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0014336	pseudogene	ChrX:132505157-132506157 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0014798	pseudogene	ChrX:151329152-151330116 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0014072	pseudogene	Chr9:22405479-22406472 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0012948	pseudogene	Chr4:49426971-49427951 (-)
PWK/PhJ	MGP_PWKPhJ_G0013397	pseudogene	Chr9:21684364-21685344 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013181	pseudogene	Chr9:22194942-22195934 (-)
WSB/EiJ	MGP_WSBEiJ_G0013638	pseudogene	Chr9:21876951-21877944 (-)

Homology

• Gene Tree
  Amd-ps1
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000083823 (Evidence)
• NCBI Gene
  11701

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083823	Ensembl Gene Model | MGI Sequence Detail	994	C57BL/6J
transcript	ENSMUST00000120127	Ensembl | MGI Sequence Detail	994	Not Applicable

Molecular
Reagents

• All nucleic 1

  Genomic 1

Other
Accession IDs

MGI:1202721

References

• Summaries
  All 5
• Earliest
  J:48430 Nishimura K, et al., Structure and activity of mouse S-adenosylmethionine decarboxylase gene promoters and properties of the encoded proteins. Biochem J. 1998 Jun 15;332(Pt 3):651-9

TSS for Amd-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162417	ChrX:153937863-153937867 (+)	-326 bp