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Igkj1 Gene Detail
Summary
  • Symbol
    Igkj1
  • Name
    immunoglobulin kappa joining 1
  • Feature Type
    gene segment
  • IDs
    MGI:1316689
    NCBI Gene: 110759
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:70699546-70699583 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 32.04 cM
  • Mapping Data
    5 experiments
Strain
Comparison
more
  • SNPs within 2kb
    108 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1316689
 gene segment Chr6:70699546-70699583 (+)
129S1/SvImJ MGP_129S1SvImJ_G0000037
 gene segment Chr6:71136705-71136742 (+)
A/J MGP_AJ_G0000039
 gene segment Chr6:68427786-68427823 (+)
AKR/J MGP_AKRJ_G0000040
 gene segment Chr6:70398480-70398517 (+)
BALB/cJ MGP_BALBcJ_G0000037
 gene segment Chr6:68453235-68453272 (+)
C3H/HeJ MGP_C3HHeJ_G0000038
 gene segment Chr6:113868380-113868417 (-)
C57BL/6NJ MGP_C57BL6NJ_G0000043
 gene segment Chr6:73023233-73023270 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0000024
 gene segment Chr6:67615759-67615796 (+)
CAST/EiJ MGP_CASTEiJ_G0000038
 gene segment Chr6:70234469-70234506 (+)
CBA/J MGP_CBAJ_G0000034
 gene segment Chr6:75890879-75890916 (+)
DBA/2J MGP_DBA2J_G0000036
 gene segment Chr6:67803376-67803413 (+)
FVB/NJ MGP_FVBNJ_G0000034
 gene segment Chr6:67170370-67170407 (+)
LP/J MGP_LPJ_G0000039
 gene segment Chr6:71076369-71076406 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0000035
 gene segment Chr6:79449771-79449808 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0000043
 gene segment Chr6:70222054-70222091 (+)
PWK/PhJ MGP_PWKPhJ_G0000030
 gene segment Chr6:66659829-66659866 (+)
SPRET/EiJ MGP_SPRETEiJ_G0000025
 gene segment Chr6:68950369-68950406 (+)
WSB/EiJ MGP_WSBEiJ_G0000036
 gene segment Chr6:70560538-70560575 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    1 phenotype from multigenic genotypes
    6 phenotype references
Mice homozygous for a reporter allele are healthy and fertile.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    26
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 110759 NCBI Gene Model | MGI Sequence Detail 38 C57BL/6J ±  kb
transcript BC013496 GenBank | ENA | DDBJ | MGI Sequence Detail 1038 FVB/N  
polypeptide A0A0G2JEZ6 UniProt | EBI | MGI Sequence Detail 13 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 10
    Genomic 9
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 20
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:32390 Sakano H, et al., Sequences at the somatic recombination sites of immunoglobulin light-chain genes. Nature. 1979 Jul 26;280(5720):288-94
  • Latest
    J:194594 Andrews SF, et al., Global analysis of B cell selection using an immunoglobulin light chain-mediated model of autoreactivity. J Exp Med. 2013 Jan 14;210(1):125-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory