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Krtap20-1 Gene Detail
Summary
  • Symbol
    Krtap20-1
  • Name
    keratin associated protein 20-1
  • Synonyms
    Krtap6-3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1330279
    NCBI Gene: 100040249
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:88880912-88881422 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 51.42 cM, cytoband C3.3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    207 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1330279
 protein coding gene Chr16:88880903-88881422 (+)
129S1/SvImJ MGP_129S1SvImJ_G0023011
 protein coding gene Chr16:89926265-89926784 (+)
A/J MGP_AJ_G0022979
 protein coding gene Chr16:85749283-85749802 (+)
AKR/J MGP_AKRJ_G0022949
 protein coding gene Chr16:88369161-88369680 (+)
BALB/cJ MGP_BALBcJ_G0022981
 protein coding gene Chr16:86279680-86280199 (+)
C3H/HeJ MGP_C3HHeJ_G0022742
 protein coding gene Chr16:88921360-88921879 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023428
 protein coding gene Chr16:92815581-92816100 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0022262
 protein coding gene Chr16:89375557-89376064 (+)
CBA/J MGP_CBAJ_G0022711
 protein coding gene Chr16:96769808-96770327 (+)
DBA/2J MGP_DBA2J_G0022845
 protein coding gene Chr16:85679497-85680016 (+)
FVB/NJ MGP_FVBNJ_G0022820
 protein coding gene Chr16:84773816-84774722 (+)
LP/J MGP_LPJ_G0022915
 protein coding gene Chr16:89628748-89629267 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022840
 protein coding gene Chr16:101376836-101377355 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0023446
 protein coding gene Chr16:88855516-88856035 (+)
PWK/PhJ MGP_PWKPhJ_G0022006
 protein coding gene Chr16:85826401-85826908 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021838
 protein coding gene Chr16:88410192-88410699 (+)
WSB/EiJ MGP_WSBEiJ_G0022313
 protein coding gene Chr16:89092202-89092721 (+)



Homology
more
  • Human Ortholog
    KRTAP20-1, keratin associated protein 20-1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    KRTAP20-1, keratin associated protein 20-1
  • Synonyms
    KAP20.1
  • Links
    NCBI Gene ID: 337975
    neXtProt AC: NX_Q3LI63
    UniProt: Q3LI63

  • Chr Location
    21q22.11; chr21:30616425-30616699 (+)  GRCh38
  • Human Ortholog
    KRTAP20-2, keratin associated protein 20-2
  • Synonyms
    KAP20.2
  • Links
    NCBI Gene ID: 337976
    neXtProt AC: NX_Q3LI61
    UniProt: Q3LI61

  • Chr Location
    21q22.11; chr21:30635206-30635619 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    29
  • RefSeq
    2
  • UniProt
    3
Representative SequencesLengthStrain/SpeciesFlank
genomic 100040249 NCBI Gene Model | MGI Sequence Detail 511 C57BL/6J ±  kb
transcript NM_010674 RefSeq | MGI Sequence Detail 511 C57BL/6  
polypeptide NP_034804 RefSeq | MGI Sequence Detail 57 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR052878 Keratin-associated matrix protein
    IPR021743 Keratin-associated protein, type8/19/20/21/22
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 4
Other
Accession IDs
less
MGI:7539718
References
more
  • Summaries
    All 19
    Phenotypes 6
  • Earliest
    J:44334 Aoki N, et al., Isolation and characterization of mouse high-glycine/tyrosine proteins. J Biol Chem. 1997 Nov 28;272(48):30512-8
  • Latest
    J:335294 Redhead Y, et al., Craniofacial dysmorphology in Down syndrome is caused by increased dosage of Dyrk1a and at least three other genes. Development. 2023 Apr 15;150(8):dev201077
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory