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Bcl7c Gene Detail
Summary
  • Symbol
    Bcl7c
  • Name
    B cell CLL/lymphoma 7C
  • Synonyms
    C230096E12Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1332237
    NCBI Gene: 12055
  • Alliance
    gene page
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:127260626-127307938 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 69.65 cM, cytoband F4
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1370 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1332237
 protein coding gene Chr7:127260626-127308105 (-)
129S1/SvImJ MGP_129S1SvImJ_G0033048
 protein coding gene Chr7:132022561-132078813 (-)
A/J MGP_AJ_G0033031
 protein coding gene Chr7:128504996-128553127 (-)
AKR/J MGP_AKRJ_G0032963
 protein coding gene Chr7:131824577-131877021 (-)
BALB/cJ MGP_BALBcJ_G0033032
 protein coding gene Chr7:128157414-128204601 (-)
C3H/HeJ MGP_C3HHeJ_G0032746
 protein coding gene Chr7:131726847-131777279 (-)
C57BL/6NJ MGP_C57BL6NJ_G0033541
 protein coding gene Chr7:137173459-137228191 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0030514
 protein coding gene Chr7:129700877-129751282 (-)
CAST/EiJ MGP_CASTEiJ_G0032075
 protein coding gene Chr7:123517587-123571036 (-)
CBA/J MGP_CBAJ_G0032719
 protein coding gene Chr7:141815675-141873007 (-)
DBA/2J MGP_DBA2J_G0032871
 protein coding gene Chr7:126484464-126531775 (-)
FVB/NJ MGP_FVBNJ_G0032824
 protein coding gene Chr7:126336392-126384493 (-)
LP/J MGP_LPJ_G0032965
 protein coding gene Chr7:133501861-133554884 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0032856
 protein coding gene Chr7:142903941-142963058 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0033561
 protein coding gene Chr7:130813318-130863829 (-)
PWK/PhJ MGP_PWKPhJ_G0031782
 protein coding gene Chr7:119492327-119545412 (-)
SPRET/EiJ MGP_SPRETEiJ_G0031628
 protein coding gene Chr7:117618562-117668131 (-)
WSB/EiJ MGP_WSBEiJ_G0032187
 protein coding gene Chr7:131774575-131828878 (-)



Homology
more
  • Human Ortholog
    BCL7C, BAF chromatin remodeling complex subunit BCL7C
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    BCL7C, BAF chromatin remodeling complex subunit BCL7C
  • Synonyms
    SMARCJ3
  • Links
    NCBI Gene ID: 9274
    neXtProt AC: NX_Q8WUZ0
    UniProt: Q8WUZ0

  • Chr Location
    16p11.2; chr16:30833626-30894302 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    16
  • GO References
    14
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    716
  • Tissues
    7
  • cDNA Data
    8
  • Literature Summary
    3
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 12055 NCBI Gene Model | MGI Sequence Detail 47313 C57BL/6J ±  kb
    transcript NM_001347652 RefSeq | MGI Sequence Detail 6360 C57BL/6  
    polypeptide O08664 UniProt | EBI | MGI Sequence Detail 217 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 10
      cDNA 8
      Primer pair 2

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGI:2442567
    References
    more
    • Summaries
      All 42
      Developmental Gene Expression 3
      Gene Ontology 14
      Phenotypes 7
    • Earliest
      J:35263 Wang W, et al., Diversity and specialization of mammalian SWI/SNF complexes. Genes Dev. 1996 Sep 1;10(17):2117-30
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory