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Sec23b Gene Detail
Summary
  • Symbol
    Sec23b
  • Name
    SEC23 homolog B, COPII coat complex component
  • Feature Type
    protein coding gene
  • IDs
    MGI:1350925
    NCBI Gene: 27054
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:144398165-144432673 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 71.02 cM, cytoband H1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1317 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1350925
 protein coding gene Chr2:144398149-144432673 (+)
129S1/SvImJ MGP_129S1SvImJ_G0026589
 protein coding gene Chr2:148664377-148700015 (+)
A/J MGP_AJ_G0026553
 protein coding gene Chr2:142644090-142679095 (+)
AKR/J MGP_AKRJ_G0026527
 protein coding gene Chr2:146736146-146772301 (+)
BALB/cJ MGP_BALBcJ_G0026565
 protein coding gene Chr2:143080912-143115968 (+)
C3H/HeJ MGP_C3HHeJ_G0026308
 protein coding gene Chr2:147280071-147318660 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027010
 protein coding gene Chr2:153110282-153146251 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024387
 protein coding gene Chr2:136817533-136851904 (+)
CAST/EiJ MGP_CASTEiJ_G0025769
 protein coding gene Chr2:147619629-147654952 (+)
CBA/J MGP_CBAJ_G0026288
 protein coding gene Chr2:158699124-158737793 (+)
DBA/2J MGP_DBA2J_G0026422
 protein coding gene Chr2:141923781-141958276 (+)
FVB/NJ MGP_FVBNJ_G0026386
 protein coding gene Chr2:140504196-140538338 (+)
LP/J MGP_LPJ_G0026526
 protein coding gene Chr2:148810079-148846820 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026406
 protein coding gene Chr2:162889553-162930477 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027065
 protein coding gene Chr2:146727564-146763150 (+)
PWK/PhJ MGP_PWKPhJ_G0025505
 protein coding gene Chr2:141586623-141621450 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025306
 protein coding gene Chr2:145775553-145810025 (+)
WSB/EiJ MGP_WSBEiJ_G0025842
 protein coding gene Chr2:147740633-147776282 (+)



Homology
more
  • Human Ortholog
    SEC23B, SEC23 homolog B, COPII coat complex component
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SEC23B, SEC23 homolog B, COPII coat complex component
  • Synonyms
    CDA-II, CDAII, CDAN2, CWS7, HEMPAS, hSec23B
  • Links
    NCBI Gene ID: 10483
    neXtProt AC: NX_Q15437
    UniProt: Q15437

  • Chr Location
    20p11.23; chr20:18507520-18561415 (+)  GRCh38
Human Diseases
more
  • Diseases
    2 with human SEC23B associations

Human Disease Mouse Models
      
IDs
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    32 phenotypes from 4 alleles in 6 genetic backgrounds
    4 phenotypes from multigenic genotypes
    8 images
    16 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null mutation display complete neonatal lethality, fail to suckle, and show degeneration of the secretory tissues in the pancreas, salivary gland, and gastric glands.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    15
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    18
  • Literature Summary
    3
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 27054 NCBI Gene Model | MGI Sequence Detail 34509 C57BL/6J ±  kb
    transcript NM_001355379 RefSeq | MGI Sequence Detail 3056 C57BL/6  
    polypeptide Q9D662 UniProt | EBI | MGI Sequence Detail 767 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 18
      cDNA 18

      Microarray probesets 4
    References
    more
    • Summaries
      All 43
      Developmental Gene Expression 3
      Gene Ontology 8
      Phenotypes 16
    • Earliest
      J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
    • Latest
      J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/05/2024
    MGI 6.24     		The Jackson Laboratory