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Gatd3a Gene Detail
Summary
  • Symbol
    Gatd3a
  • Name
    glutamine amidotransferase like class 1 domain containing 3A
  • Synonyms
    D10Jhu81e
  • Feature Type
    protein coding gene
  • IDs
    MGI:1351861
    NCBI Gene: 28295
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:77997900-78005589 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 39.72 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    345 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1351861
 protein coding gene Chr10:77997900-78005616 (-)
129S1/SvImJ MGP_129S1SvImJ_G0017417
 protein coding gene Chr10:78596980-78604679 (-)
A/J MGP_AJ_G0017395
 protein coding gene Chr10:75861817-75869516 (-)
AKR/J MGP_AKRJ_G0017358
 protein coding gene Chr10:77896231-77903932 (-)
BALB/cJ MGP_BALBcJ_G0017357
 protein coding gene Chr10:76030129-76037830 (-)
C3H/HeJ MGP_C3HHeJ_G0017180
 protein coding gene Chr10:78001034-78008735 (-)
C57BL/6NJ MGP_C57BL6NJ_G0017813
 protein coding gene Chr10:81376000-81383701 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0015504
 protein coding gene Chr10:72199239-72205902 (-)
CAST/EiJ MGP_CASTEiJ_G0016750
 protein coding gene Chr10:78305138-78312811 (-)
CBA/J MGP_CBAJ_G0017152
 protein coding gene Chr10:84483357-84491058 (-)
DBA/2J MGP_DBA2J_G0017260
 protein coding gene Chr10:75104820-75112521 (-)
FVB/NJ MGP_FVBNJ_G0017252
 protein coding gene Chr10:74282062-74289763 (-)
LP/J MGP_LPJ_G0017331
 protein coding gene Chr10:79038583-79046284 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0017279
 protein coding gene Chr10:86461143-86468844 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0017855
 protein coding gene Chr10:77941484-77949185 (-)
PWK/PhJ MGP_PWKPhJ_G0016532
 protein coding gene Chr10:74982632-74990475 (-)
SPRET/EiJ MGP_SPRETEiJ_G0016317
 protein coding gene Chr10:77157597-77165605 (-)
WSB/EiJ MGP_WSBEiJ_G0016810
 protein coding gene Chr10:77926639-77934423 (-)



Homology
more
  • Human Ortholog
    GATD3, glutamine amidotransferase class 1 domain containing 3
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GATD3, glutamine amidotransferase class 1 domain containing 3
  • Synonyms
    C21orf33, ES1, GATD3A, GT335, HES1, KNPH, KNPI
  • Links
    NCBI Gene ID: 8209
    neXtProt AC: NX_A0A0B4J2D5, NX_P0DPI2
    UniProt: P0DPI2

  • Chr Location
    21q22.3; chr21:44133610-44210114 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    3
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    942
  • Tissues
    74
  • cDNA Data
    87
  • Literature Summary
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 28295 NCBI Gene Model | MGI Sequence Detail 7690 C57BL/6J ±  kb
transcript NM_138601 RefSeq | MGI Sequence Detail 1367 ZRU/MplStud  
polypeptide Q9D172 UniProt | EBI | MGI Sequence Detail 266 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • Protein Ontology
    PR:000006251 glutamine amidotransferase-like class 1 domain-containing protein 3, mitochondrial
    (term hierarchy)
  • InterPro Domains
    IPR029062 Class I glutamine amidotransferase-like
  • GlyGen
    Q9D172 1 site, 1 O-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 97
    Genomic 8
    cDNA 87
    Primer pair 2

    Microarray probesets 3
Other
Accession IDs
less
MGI:6277081
References
more
  • Summaries
    All 37
    Developmental Gene Expression 5
    Gene Ontology 3
    Phenotypes 9
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:343556 Kretschmer V, et al., Deletion of IFT20 exclusively in the RPE ablates primary cilia and leads to retinal degeneration. PLoS Biol. 2023 Dec;21(12):e3002402
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory