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Rnf11 Gene Detail
Summary
  • Symbol
    Rnf11
  • Name
    ring finger protein 11
  • Feature Type
    protein coding gene
  • IDs
    MGI:1352759
    NCBI Gene: 29864
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:109310054-109333702 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 51.29 cM, cytoband C7
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    357 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1352759
 protein coding gene Chr4:109308295-109341925 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028571
 protein coding gene Chr4:110227477-110260993 (-)
A/J MGP_AJ_G0028534
 protein coding gene Chr4:106258212-106291819 (-)
AKR/J MGP_AKRJ_G0028481
 protein coding gene Chr4:108902664-108938246 (-)
BALB/cJ MGP_BALBcJ_G0028553
 protein coding gene Chr4:106472432-106506241 (-)
C3H/HeJ MGP_C3HHeJ_G0028267
 protein coding gene Chr4:109649986-109688958 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028993
 protein coding gene Chr4:114186850-114221197 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026284
 protein coding gene Chr4:101554475-101587815 (-)
CAST/EiJ MGP_CASTEiJ_G0027703
 protein coding gene Chr4:107501480-107541613 (-)
CBA/J MGP_CBAJ_G0028236
 protein coding gene Chr4:117935762-117971418 (-)
DBA/2J MGP_DBA2J_G0028384
 protein coding gene Chr4:105879593-105913129 (-)
FVB/NJ MGP_FVBNJ_G0028352
 protein coding gene Chr4:104755852-104789538 (-)
LP/J MGP_LPJ_G0028485
 protein coding gene Chr4:110476405-110513246 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028378
 protein coding gene Chr4:123117193-123154597 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029029
 protein coding gene Chr4:109145141-109178816 (-)
PWK/PhJ MGP_PWKPhJ_G0027429
 protein coding gene Chr4:104169289-104203031 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027253
 protein coding gene Chr4:106529911-106566137 (-)
WSB/EiJ MGP_WSBEiJ_G0027784
 protein coding gene Chr4:109326838-109361488 (-)



Homology
more
  • Human Ortholog
    RNF11, ring finger protein 11
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RNF11, ring finger protein 11
  • Synonyms
    CGI-123, SID1669
  • Links
    NCBI Gene ID: 26994
    neXtProt AC: NX_Q9Y3C5
    UniProt: Q9Y3C5

  • Chr Location
    1p32.3; chr1:51236273-51273447 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    17
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    887
  • Tissues
    144
  • cDNA Data
    21
  • Literature Summary
    8
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 29864 NCBI Gene Model | MGI Sequence Detail 23649 C57BL/6J ±  kb
transcript NM_013876 RefSeq | MGI Sequence Detail 4076 C57BL/6  
polypeptide Q9QYK7 UniProt | EBI | MGI Sequence Detail 154 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 24
    cDNA 21
    Primer pair 2
    Other 1

    Microarray probesets 7
References
more
  • Summaries
    All 46
    Developmental Gene Expression 8
    Gene Ontology 6
    Phenotypes 11
  • Earliest
    J:59127 Seki N, et al., Cloning and expression profile of mouse and human genes, Rnf11/RNF11, encoding a novel RING-H2 finger protein. Biochim Biophys Acta. 1999 Dec 23;1489(2-3):421-7
  • Latest
    J:197117 Sun H, et al., Poly-small ubiquitin-like modifier (PolySUMO)-binding proteins identified through a string search. J Biol Chem. 2012 Dec 7;287(50):42071-83
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory