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Lmcd1 Gene Detail
Summary
  • Symbol
    Lmcd1
  • Name
    LIM and cysteine-rich domains 1
  • Synonyms
    dyxin
  • Feature Type
    protein coding gene
  • IDs
    MGI:1353635
    NCBI Gene: 30937
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:112250747-112307384 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 52.14 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1688 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1353635
 protein coding gene Chr6:112250719-112307386 (+)
129S1/SvImJ MGP_129S1SvImJ_G0031105
 protein coding gene Chr6:114707984-114767825 (+)
A/J MGP_AJ_G0031074
 protein coding gene Chr6:110337235-110394727 (+)
AKR/J MGP_AKRJ_G0031005
 protein coding gene Chr6:113307953-113365641 (+)
BALB/cJ MGP_BALBcJ_G0031085
 protein coding gene Chr6:110293974-110350569 (+)
C3H/HeJ MGP_C3HHeJ_G0030623
 protein coding gene Chr6:70945553-71002738 (-)
C57BL/6NJ MGP_C57BL6NJ_G0031544
 protein coding gene Chr6:117737254-117794157 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028708
 protein coding gene Chr6:107369889-107426441 (+)
CAST/EiJ MGP_CASTEiJ_G0030192
 protein coding gene Chr6:113739660-113798401 (+)
CBA/J MGP_CBAJ_G0030771
 protein coding gene Chr6:122344724-122403016 (+)
DBA/2J MGP_DBA2J_G0030924
 protein coding gene Chr6:109445971-109502953 (+)
FVB/NJ MGP_FVBNJ_G0030878
 protein coding gene Chr6:108425917-108482334 (+)
LP/J MGP_LPJ_G0031004
 protein coding gene Chr6:114773388-114829987 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030912
 protein coding gene Chr6:126675367-126732380 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031571
 protein coding gene Chr6:113328715-113385556 (+)
PWK/PhJ MGP_PWKPhJ_G0029908
 protein coding gene Chr6:108370875-108427562 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029736
 protein coding gene Chr6:112118612-112176672 (+)
WSB/EiJ MGP_WSBEiJ_G0030276
 protein coding gene Chr6:113690584-113747329 (+)



Homology
more
  • Human Ortholog
    LMCD1, LIM and cysteine rich domains 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LMCD1, LIM and cysteine rich domains 1
  • Links
    NCBI Gene ID: 29995
    neXtProt AC: NX_Q9NZU5
    UniProt: Q9NZU5

  • Chr Location
    3p25.3; chr3:8501807-8574668 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    13
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    1019
  • Tissues
    135
  • cDNA Data
    41
  • Literature Summary
    16
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 30937 NCBI Gene Model | MGI Sequence Detail 56638 C57BL/6J ±  kb
    transcript NM_144799 RefSeq | MGI Sequence Detail 1678 C57BL/6  
    polypeptide Q8VEE1 UniProt | EBI | MGI Sequence Detail 365 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 45
      cDNA 42
      Primer pair 2
      Other 1

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:2141678, MGI:2141697
    References
    more
    • Summaries
      All 50
      Developmental Gene Expression 16
      Gene Ontology 6
      Phenotypes 9
    • Earliest
      J:60526 Bespalova IN, et al., Identification of a Novel LIM Domain Gene, LMCD1, and Chromosomal Localization in Human and Mouse. Genomics. 2000 Jan 1;63(1):69-74
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory