Rps12-ps1 Pseudogene Detail

Summary

• Symbol
  Rps12-ps1
• Name
  ribosomal protein S12, pseudogene 1
• Synonyms
  Gm9153, pS12X, Rps12-ps25

• Feature Type
  pseudogene
• IDs
  MGI:1353638
  NCBI Gene: 30964
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:102533123-102533523 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 46.17 cM
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1353638	pseudogene	ChrX:102533042-102533542 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014684	pseudogene	ChrX:100135462-100135862 (+)
A/J	MGP_AJ_G0014692	pseudogene	ChrX:100069286-100069686 (+)
AKR/J	MGP_AKRJ_G0014617	pseudogene	ChrX:103089867-103092224 (+)
BALB/cJ	MGP_BALBcJ_G0014639	pseudogene	ChrX:98867184-98867584 (+)
C3H/HeJ	MGP_C3HHeJ_G0014469	pseudogene	ChrX:100598518-100598918 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015125	pseudogene	ChrX:103101033-103101433 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012814	pseudogene	ChrX:97711274-97711672 (+)
CAST/EiJ	MGP_CASTEiJ_G0014098	pseudogene	ChrX:84873876-84874736 (+)
CBA/J	MGP_CBAJ_G0014461	pseudogene	ChrX:106288942-106289342 (+)
DBA/2J	MGP_DBA2J_G0014545	pseudogene	ChrX:99314394-99314794 (+)
FVB/NJ	MGP_FVBNJ_G0014527	pseudogene	ChrX:98618413-98618813 (+)
LP/J	MGP_LPJ_G0014642	pseudogene	ChrX:101156724-101157124 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014571	pseudogene	ChrX:110944323-110944723 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015092	pseudogene	ChrX:99824500-99824900 (+)
PWK/PhJ	MGP_PWKPhJ_G0013903	pseudogene	ChrX:82451653-82452163 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013699	pseudogene	ChrX:85575229-85575629 (+)
WSB/EiJ	MGP_WSBEiJ_G0014177	pseudogene	ChrX:98548178-98548578 (+)

Homology

• Gene Tree
  Rps12-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype from 2 alleles in 1 genetic background
  3 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  1
• Targeted
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000082746 (Evidence)
• NCBI Gene
  30964

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082746	Ensembl Gene Model | MGI Sequence Detail	401	C57BL/6J
transcript	ENSMUST00000121980	Ensembl | MGI Sequence Detail	401	Not Applicable

Other
Accession IDs

MGI:3646535

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:49849 Johnston CM, et al., Developmentally regulated Xist promoter switch mediates initiation of X inactivation. Cell. 1998 Sep 18;94(6):809-17
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Rps12-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161725	ChrX:102533037-102533048 (+)	-80 bp