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Csnk1d Gene Detail
Summary
  • Symbol
    Csnk1d
  • Name
    casein kinase 1, delta
  • Synonyms
    1200006A05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1355272
    NCBI Gene: 104318
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:120849816-120882156 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 84.75 cM, cytoband E2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    532 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1355272
 protein coding gene Chr11:120848535-120882180 (-)
129S1/SvImJ MGP_129S1SvImJ_G0019534
 protein coding gene Chr11:125477395-125514366 (-)
A/J MGP_AJ_G0019501
 protein coding gene Chr11:119874656-119907810 (-)
AKR/J MGP_AKRJ_G0019471
 protein coding gene Chr11:123506525-123537714 (-)
BALB/cJ MGP_BALBcJ_G0019476
 protein coding gene Chr11:120243913-120280332 (-)
C3H/HeJ MGP_C3HHeJ_G0019282
 protein coding gene Chr11:123828347-123865056 (-)
C57BL/6NJ MGP_C57BL6NJ_G0019925
 protein coding gene Chr11:129291172-129320691 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0017550
 protein coding gene Chr11:116862913-116892614 (-)
CAST/EiJ MGP_CASTEiJ_G0018836
 protein coding gene Chr11:125336934-125367565 (-)
CBA/J MGP_CBAJ_G0019253
 protein coding gene Chr11:134312348-134349543 (-)
DBA/2J MGP_DBA2J_G0019366
 protein coding gene Chr11:119250466-119280025 (-)
FVB/NJ MGP_FVBNJ_G0019357
 protein coding gene Chr11:118967740-118999703 (-)
LP/J MGP_LPJ_G0019437
 protein coding gene Chr11:125764250-125797751 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0019390
 protein coding gene Chr11:133138702-133170875 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0019964
 protein coding gene Chr11:124181367-124214230 (-)
PWK/PhJ MGP_PWKPhJ_G0018602
 protein coding gene Chr11:120689103-120719399 (-)
SPRET/EiJ MGP_SPRETEiJ_G0018394
 protein coding gene Chr11:123935180-123970710 (-)
WSB/EiJ MGP_WSBEiJ_G0018889
 protein coding gene Chr11:124164664-124195608 (-)



Homology
more
  • Human Ortholog
    CSNK1D, casein kinase 1 delta
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CSNK1D, casein kinase 1 delta
  • Synonyms
    ASPS, CKId, CKI-delta, CKIdelta, FASPS2, HCKID
  • Links
    NCBI Gene ID: 1453
    neXtProt AC: NX_P48730
    UniProt: P48730

  • Chr Location
    17q25.3; chr17:82239019-82273750 (-)  GRCh38
Human Diseases
more
  • Diseases
    1 with Csnk1d mouse models; 1 with human CSNK1D associations

Human Disease Mouse Models
      
IDs
 View 1 model
      
IDs
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    1 with disease annotations
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    15 phenotypes from 3 alleles in 3 genetic backgrounds
    2 phenotypes from multigenic genotypes
    25 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous null mice die 1.5 to 5 days after birth and fetal weight is significantly smaller than controls.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    84
  • GO References
    16
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    820
  • Tissues
    76
  • cDNA Data
    330
  • Literature Summary
    10
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000025162 Ensembl Gene Model | MGI Sequence Detail 32341 C57BL/6J ±  kb
    transcript ENSMUST00000239115 Ensembl | MGI Sequence Detail 1823 Not Applicable  
    polypeptide ENSMUSP00000158953 Ensembl | MGI Sequence Detail 428 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 337
      cDNA 333
      Primer pair 3
      Other 1

      Microarray probesets 8
    Other
    Accession IDs
    less
    MGI:1918958, MGI:2143993
    References
    more
    • Summaries
      All 83
      Developmental Gene Expression 10
      Diseases 1
      Gene Ontology 16
      Phenotypes 25
    • Earliest
      J:54434 Leimeister C, et al., Screen for genes regulated during early kidney morphogenesis. Dev Genet. 1999;24(3-4):273-83
    • Latest
      J:341117 Tsuno Y, et al., In vivo recording of suprachiasmatic nucleus dynamics reveals a dominant role of arginine vasopressin neurons in circadian pacesetting. PLoS Biol. 2023 Aug;21(8):e3002281
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory