Gpatch11 MGI Mouse Gene Detail - MGI:1858435 - G patch domain containing 11

Symbol

Gpatch11
Name

G patch domain containing 11
Synonyms

2310002B06Rik, Ccdc75

Feature Type

protein coding gene
IDs

MGI:1858435
NCBI Gene: 53951
Alliance

gene page
Transcription Start Sites

2 TSS

Sequence Map

Chr17:79142996-79155737 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 17, 49.54 cM
Mapping Data

1 experiment

SNPs within 2kb

496 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1858435	protein coding gene	Chr17:79142951-79155737 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0024041	protein coding gene	Chr17:81670567-81683299 (+)
A/J	MGP_AJ_G0023998	protein coding gene	Chr17:79169865-79182550 (+)
AKR/J	MGP_AKRJ_G0023967	protein coding gene	Chr17:80370646-80383332 (+)
BALB/cJ	MGP_BALBcJ_G0024000	protein coding gene	Chr17:79035114-79047840 (+)
C3H/HeJ	MGP_C3HHeJ_G0023764	protein coding gene	Chr17:81276867-81289731 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0024445	protein coding gene	Chr17:84650486-84663187 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0021888	protein coding gene	Chr17:74564549-74577740 (+)
CAST/EiJ	MGP_CASTEiJ_G0023244	protein coding gene	Chr17:81880376-81893080 (+)
CBA/J	MGP_CBAJ_G0023738	protein coding gene	Chr17:88183006-88195707 (+)
DBA/2J	MGP_DBA2J_G0023867	protein coding gene	Chr17:77689005-77701763 (+)
FVB/NJ	MGP_FVBNJ_G0023833	protein coding gene	Chr17:77207752-77220443 (+)
LP/J	MGP_LPJ_G0023950	protein coding gene	Chr17:82518438-82531170 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0023861	protein coding gene	Chr17:88303136-88315863 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0024489	protein coding gene	Chr17:80849768-80862369 (+)
PWK/PhJ	MGP_PWKPhJ_G0022990	protein coding gene	Chr17:77184192-77196921 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0022801	protein coding gene	Chr17:77642880-77656009 (+)
WSB/EiJ	MGP_WSBEiJ_G0023311	protein coding gene	Chr17:81664619-81677218 (+)

Human Ortholog

GPATCH11, G-patch domain containing 11

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

GPATCH11, G-patch domain containing 11
Synonyms

CCDC75, CENP-Y, CENPY
Links

HGNC:26768

NCBI Gene ID: 253635

neXtProt AC: NX_Q8N954

UniProt: Q8N954
Chr Location

2p22.2; chr2:37084518-37099244 (+) GRCh38

MGI Vertebrate Homology

Gpatch11 stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: GPATCH11
Gene Tree

Gpatch11

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Phenotype Summary

5 phenotype references

All Mutations and Alleles

10
Endonuclease-mediated

1
Gene trapped

5
Targeted

4
Incidental Mutations

CvDC
Find Mice (IMSR)

20 strains or lines available

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All GO Annotations

4
GO References

4

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

34

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

GEISHA GPATCH11

Xenbase gpatch11

ZFIN gpatch11

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All Sequences

54
RefSeq

8
UniProt

4
CCDS

CCDS28979.1

Ensembl

ENSMUSG00000050668 (Evidence)
NCBI Gene

53951

			Length	Strain/Species	Flank
genomic	ENSMUSG00000050668	Ensembl Gene Model \| MGI Sequence Detail	12742	C57BL/6J	± kb
transcript	ENSMUST00000170759	Ensembl \| MGI Sequence Detail	4134	Not Applicable
polypeptide	ENSMUSP00000126814	Ensembl \| MGI Sequence Detail	264	Not Applicable

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UniProt

4 Sequences
Protein Ontology

PR:000029338 G patch domain-containing protein 11

(term hierarchy)
InterPro Domains

IPR025239 Domain of unknown function DUF4187

IPR000467 G-patch domain

IPR039249 G patch domain-containing protein 11

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All nucleic 34

cDNA 34

Microarray probesets 4

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MGI:2147137

Summaries

All 32

Gene Ontology 4

Phenotypes 5
Earliest

J:20131 Kerr SM, et al., Analysis of cDNA sequences from mouse testis. Mamm Genome. 1994 Sep;5(9):557-65
Latest

J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gpatch11:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr145905	Chr17:79142957-79143041 (+)	3 bp
Tssr145906	Chr17:79148388-79148417 (+)	5,407 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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