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Smgc Gene Detail
Summary
  • Symbol
    Smgc
  • Name
    submandibular gland protein C
  • Synonyms
    2310010P21Rik, DXImx49e, Sfc21
  • Feature Type
    protein coding gene
  • IDs
    MGI:1859618
    NCBI Gene: 223809
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr15:91722531-91745633 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 46.14 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    679 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1859618
 protein coding gene Chr15:91722468-91745636 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022250
 protein coding gene Chr15:93176283-93204665 (+)
A/J MGP_AJ_G0022209
 protein coding gene Chr15:89572209-89600879 (+)
AKR/J MGP_AKRJ_G0022184
 protein coding gene Chr15:92222621-92257998 (+)
BALB/cJ MGP_BALBcJ_G0022215
 protein coding gene Chr15:89694780-89724409 (+)
C3H/HeJ MGP_C3HHeJ_G0021985
 protein coding gene Chr15:92250788-92281030 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022660
 protein coding gene Chr15:96571239-96594760 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020186
 protein coding gene Chr15:85696872-85716431 (+)
CAST/EiJ MGP_CASTEiJ_G0021507
 protein coding gene Chr15:93056689-93081155 (+)
CBA/J MGP_CBAJ_G0021952
 protein coding gene Chr15:99821148-99850545 (+)
DBA/2J MGP_DBA2J_G0022079
 protein coding gene Chr15:89007519-89040671 (+)
FVB/NJ MGP_FVBNJ_G0022058
 protein coding gene Chr15:88049897-88077064 (+)
LP/J MGP_LPJ_G0022150
 protein coding gene Chr15:93305149-93350809 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022078
 protein coding gene Chr15:104190205-104236706 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022675
 protein coding gene Chr15:92340597-92367697 (+)
PWK/PhJ MGP_PWKPhJ_G0021248
 protein coding gene Chr15:89076718-89096394 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021082
 protein coding gene Chr15:92070480-92101744 (+)
WSB/EiJ MGP_WSBEiJ_G0021556
 protein coding gene Chr15:92792826-92825254 (+)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    25 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    796
  • Tissues
    14
  • cDNA Data
    10
  • Literature Summary
    7
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 223809 NCBI Gene Model | MGI Sequence Detail 23103 C57BL/6J ±  kb
transcript NM_198927 RefSeq | MGI Sequence Detail 2977 C57BL/6  
polypeptide Q6JHY2 UniProt | EBI | MGI Sequence Detail 733 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    9 Sequences
  • GlyGen
    Q6JHY2 10 sites
Molecular
Reagents
less
  • All nucleic 18
    Genomic 2
    cDNA 10
    Primer pair 6

    Microarray probesets 4
Other
Accession IDs
less
MGI:1916839
References
more
  • Summaries
    All 52
    Developmental Gene Expression 7
    Diseases 1
    Phenotypes 25
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:353621 Patel VN, et al., Specific 3-O-sulfated heparan sulfate domains regulate salivary gland basement membrane metabolism and epithelial differentiation. Nat Commun. 2024 Aug 31;15(1):7584
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory