Prdx2-ps2 Pseudogene Detail

Summary

• Symbol
  Prdx2-ps2
• Name
  peroxiredoxin 2, pseudogene 2
• Synonyms
  Prdx2-rs3, Prx ll-3, Tdpx-ps2

• Feature Type
  pseudogene
• IDs
  MGI:1859808
  NCBI Gene: 666242
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:144518407-144519230 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 78.09 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  114 from dbSNP Build 142
• Strain Annotations
  12
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1859808	pseudogene	Chr4:144518364-144519418 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0012918	pseudogene	Chr4:141903014-141903795 (+)
AKR/J	MGP_AKRJ_G0012886	pseudogene	Chr4:145847419-145849552 (+)
BALB/cJ	MGP_BALBcJ_G0012894	pseudogene	Chr4:142542507-142543449 (+)
C3H/HeJ	MGP_C3HHeJ_G0012748	pseudogene	Chr4:146319217-146320027 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013235	pseudogene	Chr4:153163045-153163871 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010159	pseudogene	Chr17:19834248-19834787 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0012719	pseudogene	Chr4:157988754-157989463 (+)
DBA/2J	MGP_DBA2J_G0012787	pseudogene	Chr4:142077836-142078426 (+)
FVB/NJ	MGP_FVBNJ_G0012797	pseudogene	Chr4:141223918-141224508 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0012808	pseudogene	Chr4:161536994-161537584 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013252	pseudogene	Chr4:146337222-146338912 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Prdx2-ps2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Prdx2-ps2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000083998 (Evidence)
• NCBI Gene
  666242

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083998	Ensembl Gene Model | MGI Sequence Detail	824	C57BL/6J
transcript	ENSMUST00000117259	Ensembl | MGI Sequence Detail	594	Not Applicable

Molecular
Reagents

• All nucleic 3

  Genomic 2

  Primer pair 1

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:1321391, MGI:3650000, MGI:6276282

References

• Summaries
  All 12

  Phenotypes 2
• Earliest
  J:49541 Lim MJ, et al., The type II peroxiredoxin gene family of the mouse: molecular structure, expression and evolution. Gene. 1998 Aug 17;216(1):197-205
• Latest
  J:62456 Lyu MS, et al., Genetic mapping of six mouse peroxiredoxin genes and fourteen peroxiredoxin related sequences. Mamm Genome. 1999 Oct;10(10):1017-9