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Raet1d Gene Detail
Summary
  • Symbol
    Raet1d
  • Name
    retinoic acid early transcript delta
  • Synonyms
    RAE-1delta
  • Feature Type
    protein coding gene
  • IDs
    MGI:1861032
    NCBI Gene: 56554
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr10:22236451-22250038 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 10.02 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    258 from dbSNP Build 142
  • Strain Annotations
    11
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1861032
 protein coding gene Chr10:22181145-22250042 (+)
129S1/SvImJ no annotation
A/J MGP_AJ_G0017045
 protein coding gene Chr10:19516963-19535968 (+)
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0017007
 protein coding gene Chr10:19640570-19654053 (+)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0017465
 protein coding gene Chr10:20772739-20792649 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0016407
 protein coding gene Chr10:19906407-19916978 (+)
CBA/J MGP_CBAJ_G0016799
 protein coding gene Chr10:21689963-21715030 (+)
DBA/2J no annotation
FVB/NJ no annotation
LP/J MGP_LPJ_G0016982
 protein coding gene Chr10:20087678-20098178 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016931
 protein coding gene Chr10:21678896-21872927 (+)
NZO/HlLtJ no annotation
PWK/PhJ MGP_PWKPhJ_G0016193
 protein coding gene Chr10:19164503-19175258 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015881
 protein coding gene Chr10:260505-287977 (-)
WSB/EiJ MGP_WSBEiJ_G0016471
 protein coding gene Chr10:19869325-19880835 (+)



Homology
more
  • Human Ortholog
    RAET1G, retinoic acid early transcript 1G
  • Vertebrate Orthologs
    11
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RAET1G, retinoic acid early transcript 1G
  • Synonyms
    ULBP5
  • Links
    NCBI Gene ID: 353091
    neXtProt AC: NX_Q6H3X3
    UniProt: Q6H3X3

  • Chr Location
    6q25.1; chr6:149916878-149923121 (-)  GRCh38
  • Human Ortholog
    RAET1L, retinoic acid early transcript 1L
  • Synonyms
    RAET1H, ULBP6
  • Links
    NCBI Gene ID: 154064
    neXtProt AC: NX_Q5VY80
    UniProt: Q5VY80

  • Chr Location
    6q25.1; chr6:150018334-150025532 (-)  GRCh38
  • Human Ortholog
    ULBP2, UL16 binding protein 2
  • Synonyms
    ALCAN-alpha, N2DL2, NKG2DL2, RAET1H, RAET1L
  • Links
    NCBI Gene ID: 80328
    neXtProt AC: NX_Q9BZM5
    UniProt: Q9BZM5

  • Chr Location
    6q25.1; chr6:149942014-149949235 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from multigenic genotypes
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    21
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    711
  • Tissues
    5
  • cDNA Data
    1
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000078452 Ensembl Gene Model | MGI Sequence Detail 13588 C57BL/6J ±  kb
transcript ENSMUST00000095795 Ensembl | MGI Sequence Detail 1271 Not Applicable  
polypeptide ENSMUSP00000093471 Ensembl | MGI Sequence Detail 249 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000014385 retinoic acid early-inducible protein 1-delta
    (term hierarchy)
  • InterPro Domains
    IPR050208 Antigen-presenting and immune regulatory MHC class I-related
    IPR011162 MHC classes I/II-like antigen recognition protein
    IPR037055 MHC class I-like antigen recognition-like superfamily
    IPR029287 Retinoic acid early-inducible protein 1
  • GlyGen
    Q9JI58 4 sites
Molecular
Reagents
less
  • All nucleic 2
    cDNA 1
    Primer pair 1

    Microarray probesets 1
References
more
  • Summaries
    All 22
    Developmental Gene Expression 2
    Gene Ontology 4
    Phenotypes 7
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:256685 Thompson TW, et al., Endothelial cells express NKG2D ligands and desensitize antitumor NK responses. Elife. 2017 Dec 12;6:e30881
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory