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Ctsr Gene Detail
Summary
  • Symbol
    Ctsr
  • Name
    cathepsin R
  • Feature Type
    protein coding gene
  • IDs
    MGI:1861723
    NCBI Gene: 56835
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:61307029-61312002 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 32.67 cM, cytoband B2-B3
  • Mapping Data
    7 experiments
Strain
Comparison
more
  • SNPs within 2kb
    284 from dbSNP Build 142
  • Strain Annotations
    18
  • PCR
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1861723
 protein coding gene Chr13:61307018-61312070 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020658
 protein coding gene Chr13:60950974-60957058 (-)
A/J MGP_AJ_G0020613
 protein coding gene Chr13:58677330-58682363 (-)
AKR/J MGP_AKRJ_G0020588
 protein coding gene Chr13:60424893-60431076 (-)
BALB/cJ MGP_BALBcJ_G0020609
 protein coding gene Chr13:58916682-58922080 (-)
C3H/HeJ MGP_C3HHeJ_G0020406
 protein coding gene Chr13:60206908-60211873 (-)
C57BL/6NJ MGP_C57BL6NJ_G0021043
 protein coding gene Chr13:62791673-62797731 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018624
 protein coding gene Chr13:56487276-56492637 (-)
CAST/EiJ MGP_CASTEiJ_G0019922
 protein coding gene Chr13:60438399-60443346 (-)
CBA/J MGP_CBAJ_G0020366
 protein coding gene Chr13:65137465-65144935 (-)
DBA/2J MGP_DBA2J_G0020490
 protein coding gene Chr13:58224607-58229586 (-)
FVB/NJ MGP_FVBNJ_G0020468
 protein coding gene Chr13:57721872-57726870 (-)
LP/J MGP_LPJ_G0020566
 protein coding gene Chr13:61186661-61194732 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020498
 protein coding gene Chr13:64393854-64401771 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0021086
 protein coding gene Chr13:60016782-60021771 (-)
PWK/PhJ MGP_PWKPhJ_G0019675
 protein coding gene Chr13:58261116-58266434 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019504
 protein coding gene Chr13:58961952-58967007 (-)
WSB/EiJ MGP_WSBEiJ_G0019983
 protein coding gene Chr13:60486582-60493113 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    8
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    753
  • Tissues
    32
  • cDNA Data
    14
  • Literature Summary
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 56835 NCBI Gene Model | MGI Sequence Detail 4974 C57BL/6J ±  kb
transcript NM_020284 RefSeq | MGI Sequence Detail 1335 ZRU/MplStud  
polypeptide Q9JIA9 UniProt | EBI | MGI Sequence Detail 334 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 17
    cDNA 15
    Primer pair 2

    Microarray probesets 3
Other
Accession IDs
less
MGI:2145231
References
more
  • Summaries
    All 31
    Developmental Gene Expression 5
    Gene Ontology 3
    Phenotypes 3
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:215487 Thompson CL, et al., A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain. Neuron. 2014 Jul 16;83(2):309-23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory