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Abcb9 Gene Detail
Summary
  • Symbol
    Abcb9
  • Name
    ATP-binding cassette, sub-family B member 9
  • Synonyms
    mKIAA1520, TAPL
  • Feature Type
    protein coding gene
  • IDs
    MGI:1861729
    NCBI Gene: 56325
  • Alliance
    gene page
  • Transcription Start Sites
    10 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:124199920-124234009 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 63.36 cM, cytoband F
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1037 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1861729
 protein coding gene Chr5:124199593-124234009 (-)
129S1/SvImJ MGP_129S1SvImJ_G0030087
 protein coding gene Chr5:127841797-127883007 (-)
A/J MGP_AJ_G0030052
 protein coding gene Chr5:122532341-122567655 (-)
AKR/J MGP_AKRJ_G0029988
 protein coding gene Chr5:126476316-126511737 (-)
BALB/cJ MGP_BALBcJ_G0030063
 protein coding gene Chr5:123870271-123904711 (-)
C3H/HeJ MGP_C3HHeJ_G0029780
 protein coding gene Chr5:127092863-127127786 (-)
C57BL/6NJ MGP_C57BL6NJ_G0030516
 protein coding gene Chr5:132805593-132843862 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027742
 protein coding gene Chr5:117068686-117104483 (-)
CAST/EiJ MGP_CASTEiJ_G0029189
 protein coding gene Chr5:126202145-126245368 (-)
CBA/J MGP_CBAJ_G0029750
 protein coding gene Chr5:138023722-138061315 (-)
DBA/2J MGP_DBA2J_G0029900
 protein coding gene Chr5:122554001-122589302 (-)
FVB/NJ MGP_FVBNJ_G0029856
 protein coding gene Chr5:121589272-121623817 (-)
LP/J MGP_LPJ_G0029989
 protein coding gene Chr5:128400313-128436486 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029887
 protein coding gene Chr5:141617811-141656616 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030557
 protein coding gene Chr5:126095940-126134702 (-)
PWK/PhJ MGP_PWKPhJ_G0028903
 protein coding gene Chr5:121366336-121402528 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028740
 protein coding gene Chr5:123744493-123781072 (-)
WSB/EiJ MGP_WSBEiJ_G0029264
 protein coding gene Chr5:126771716-126809069 (-)



Homology
more
  • Human Ortholog
    ABCB9, ATP binding cassette subfamily B member 9
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ABCB9, ATP binding cassette subfamily B member 9
  • Synonyms
    EST122234, TAPL
  • Links
    NCBI Gene ID: 23457
    neXtProt AC: NX_Q9NP78
    UniProt: Q9NP78

  • Chr Location
    12q24.31; chr12:122918610-122981649 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    17 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    26
  • GO References
    9
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    876
  • Tissues
    107
  • cDNA Data
    17
  • Literature Summary
    4
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 56325 NCBI Gene Model | MGI Sequence Detail 34090 C57BL/6J ±  kb
    transcript NM_019875 RefSeq | MGI Sequence Detail 3334 C57BL/6  
    polypeptide Q9JJ59 UniProt | EBI | MGI Sequence Detail 762 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      2 Sequences
    • Protein Ontology
      PR:000003553 ABC-type oligopeptide transporter ABCB9
      (term hierarchy)
    • PDB
      7V5C, 7V5D, 7VFI
    • EC
      7.4.2.6
    • InterPro Domains
      IPR003593 AAA+ ATPase domain
      IPR003439 ABC transporter-like, ATP-binding domain
      IPR017871 ABC transporter-like, conserved site
      IPR011527 ABC transporter type 1, transmembrane domain
      IPR036640 ABC transporter type 1, transmembrane domain superfamily
      IPR030254 ATP-binding cassette subfamily B member 9, six-transmembrane helical domain
      IPR027417 P-loop containing nucleoside triphosphate hydrolase
      IPR039421 Type 1 protein exporter
    • GlyGen
      Q9JJ59 2 sites, 1 N-linked glycan (2 sites)
    Molecular
    Reagents
    less
    • All nucleic 20
      cDNA 18
      Primer pair 1
      Other 1

      Microarray probesets 4
    References
    more
    • Summaries
      All 50
      Developmental Gene Expression 4
      Gene Ontology 9
      Phenotypes 17
    • Earliest
      J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory