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Pcnx3 Gene Detail
Summary
  • Symbol
    Pcnx3
  • Name
    pecanex homolog 3
  • Synonyms
    Pcnxl3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1861733
    NCBI Gene: 104401
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
  • Candidate for QTL
    1 QTL
Location &
Maps
more
  • Sequence Map
    Chr19:5714663-5738936 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 19, 4.34 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    338 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1861733
 protein coding gene Chr19:5714663-5739036 (-)
129S1/SvImJ MGP_129S1SvImJ_G0024721
 protein coding gene Chr19:2649757-2673317 (-)
A/J MGP_AJ_G0024687
 protein coding gene Chr19:2504186-2528034 (-)
AKR/J MGP_AKRJ_G0024660
 protein coding gene Chr19:2570625-2594473 (-)
BALB/cJ MGP_BALBcJ_G0024687
 protein coding gene Chr19:2498527-2522429 (-)
C3H/HeJ MGP_C3HHeJ_G0024455
 protein coding gene Chr19:2588818-2612720 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025134
 protein coding gene Chr19:2717409-2740961 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0022564
 protein coding gene Chr19:2413153-2436769 (-)
CAST/EiJ MGP_CASTEiJ_G0023927
 protein coding gene Chr19:2606000-2632105 (-)
CBA/J MGP_CBAJ_G0024427
 protein coding gene Chr19:2839581-2866448 (-)
DBA/2J MGP_DBA2J_G0024554
 protein coding gene Chr19:2500422-2523971 (-)
FVB/NJ MGP_FVBNJ_G0024520
 protein coding gene Chr19:2496756-2521193 (-)
LP/J MGP_LPJ_G0024640
 protein coding gene Chr19:2625114-2649275 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0024550
 protein coding gene Chr19:2684734-2711014 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0025182
 protein coding gene Chr19:2591157-2614709 (-)
PWK/PhJ MGP_PWKPhJ_G0023673
 protein coding gene Chr19:2522469-2546494 (-)
SPRET/EiJ MGP_SPRETEiJ_G0023478
 protein coding gene Chr19:2574296-2598994 (-)
WSB/EiJ MGP_WSBEiJ_G0023989
 protein coding gene Chr19:2600972-2624555 (-)



Homology
more
  • Human Ortholog
    PCNX3, pecanex 3
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PCNX3, pecanex 3
  • Synonyms
    PCNXL3
  • Links
    NCBI Gene ID: 399909
    neXtProt AC: NX_Q9H6A9
    UniProt: Q9H6A9

  • Chr Location
    11q13.1; chr11:65615776-65637439 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    776
  • Tissues
    53
  • cDNA Data
    112
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000054874 Ensembl Gene Model | MGI Sequence Detail 24274 C57BL/6J ±  kb
transcript ENSMUST00000113615 Ensembl | MGI Sequence Detail 7264 Not Applicable  
polypeptide ENSMUSP00000109245 Ensembl | MGI Sequence Detail 2028 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 117
    Genomic 4
    cDNA 113

    Microarray probesets 3
References
more
  • Summaries
    All 32
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 9
  • Earliest
    J:63233 Saridaki A, et al., Genomic sequencing reveals the structure of the Kcnk6 and map3k11 genes and their close vicinity to the sipa1 gene on mouse chromosome 19. Cytogenet Cell Genet. 2000;89(1-2):85-8
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory