Zfp862-ps Pseudogene Detail

Summary

• Symbol
  Zfp862-ps
• Name
  zinc finger protein 862, pseudogene
• Synonyms
  4732460K03Rik, mKIAA0543, Zfp862

• Feature Type
  pseudogene
• IDs
  MGI:1889827
  NCBI Gene: 58894
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:48481308-48509057 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 23.48 cM
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  942 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1889827	pseudogene	Chr6:48481273-48511766 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039782	pseudogene	Chr6:47449257-47480733 (+)
A/J	MGP_AJ_G0039778	pseudogene	Chr6:45296369-45322381 (+)
AKR/J	MGP_AKRJ_G0039706	pseudogene	Chr6:46890740-46916750 (+)
BALB/cJ	MGP_BALBcJ_G0039752	pseudogene	Chr6:45629081-45655097 (+)
C3H/HeJ	MGP_C3HHeJ_G0039409	pseudogene	Chr6:46894751-46920840 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040313	pseudogene	Chr6:48569993-48601379 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0028337	pseudogene	Chr6:42930588-42956020 (+)
CAST/EiJ	MGP_CASTEiJ_G0038525	pseudogene	Chr6:46612836-46640081 (+)
CBA/J	MGP_CBAJ_G0039380	pseudogene	Chr6:50582056-50608068 (+)
DBA/2J	MGP_DBA2J_G0039578	pseudogene	Chr6:45214017-45240559 (+)
FVB/NJ	MGP_FVBNJ_G0039536	pseudogene	Chr6:44845139-44871103 (+)
LP/J	MGP_LPJ_G0039616	pseudogene	Chr6:47419760-47450305 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039536	pseudogene	Chr6:53404247-53430259 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040420	pseudogene	Chr6:46751484-46786802 (+)
PWK/PhJ	MGP_PWKPhJ_G0038202	pseudogene	Chr6:44744421-44773829 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037946	pseudogene	Chr6:46099948-46129142 (+)
WSB/EiJ	MGP_WSBEiJ_G0038759	pseudogene	Chr6:46752259-46783918 (+)

Homology

• Gene Tree
  Zfp862-ps
  

Expression

• Assay Results
  774
• Tissues
  47
• cDNA Data
  10
• Literature Summary
  2

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  2

• Ensembl
  ENSMUSG00000107476 (Evidence)
• NCBI Gene
  58894

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107476	Ensembl Gene Model | MGI Sequence Detail	27750	C57BL/6J
transcript	ENSMUST00000203457	Ensembl | MGI Sequence Detail	3551	Not Applicable

Molecular
Reagents

• All nucleic 10

  cDNA 10

  
  

  Microarray probesets 2

References

• Summaries
  All 18

  Developmental Gene Expression 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for Zfp862-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr56130	Chr6:48481264-48481340 (+)	-6 bp
Tssr56131	Chr6:48485268-48485288 (+)	3,970 bp