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Pacsin3 Gene Detail
Summary
  • Symbol
    Pacsin3
  • Name
    protein kinase C and casein kinase substrate in neurons 3
  • Synonyms
    4921507A02Rik, 6330413E15Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1891410
    NCBI Gene: 80708
  • Alliance
    gene page
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:91086299-91095024 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 50.61 cM, cytoband E1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    195 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1891410
 protein coding gene Chr2:91086215-91095025 (+)
129S1/SvImJ MGP_129S1SvImJ_G0026147
 protein coding gene Chr2:92575251-92585540 (+)
A/J MGP_AJ_G0026108
 protein coding gene Chr2:88867923-88876602 (+)
AKR/J MGP_AKRJ_G0026089
 protein coding gene Chr2:91323305-91331976 (+)
BALB/cJ MGP_BALBcJ_G0026117
 protein coding gene Chr2:89048538-89057241 (+)
C3H/HeJ MGP_C3HHeJ_G0025868
 protein coding gene Chr2:91602795-91611499 (+)
C57BL/6NJ MGP_C57BL6NJ_G0026568
 protein coding gene Chr2:95835660-95844367 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0023958
 protein coding gene Chr2:85375174-85383805 (+)
CAST/EiJ MGP_CASTEiJ_G0025333
 protein coding gene Chr2:92139158-92149841 (+)
CBA/J MGP_CBAJ_G0025846
 protein coding gene Chr2:99091103-99099802 (+)
DBA/2J MGP_DBA2J_G0025982
 protein coding gene Chr2:88467070-88475769 (+)
FVB/NJ MGP_FVBNJ_G0025945
 protein coding gene Chr2:87576353-87585050 (+)
LP/J MGP_LPJ_G0026086
 protein coding gene Chr2:92785089-92793804 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0025971
 protein coding gene Chr2:102123645-102133832 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0026622
 protein coding gene Chr2:91394767-91403432 (+)
PWK/PhJ MGP_PWKPhJ_G0025068
 protein coding gene Chr2:88197890-88206681 (+)
SPRET/EiJ MGP_SPRETEiJ_G0024869
 protein coding gene Chr2:90961314-90970039 (+)
WSB/EiJ MGP_WSBEiJ_G0025400
 protein coding gene Chr2:91992705-92001390 (+)



Homology
more
  • Human Ortholog
    PACSIN3, protein kinase C and casein kinase substrate in neurons 3
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PACSIN3, protein kinase C and casein kinase substrate in neurons 3
  • Synonyms
    SDPIII
  • Links
    NCBI Gene ID: 29763
    neXtProt AC: NX_Q9UKS6
    UniProt: Q9UKS6

  • Chr Location
    11p11.2; chr11:47177522-47186443 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    32
  • GO References
    9
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    739
  • Tissues
    32
  • cDNA Data
    58
  • Literature Summary
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000027257 Ensembl Gene Model | MGI Sequence Detail 8726 C57BL/6J ±  kb
transcript ENSMUST00000059566 Ensembl | MGI Sequence Detail 1867 Not Applicable  
polypeptide ENSMUSP00000054391 Ensembl | MGI Sequence Detail 424 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 60
    cDNA 59
    Primer pair 1

    Microarray probesets 7
Other
Accession IDs
less
MGI:1917962, MGI:1921299, MGI:2139346
References
more
  • Summaries
    All 55
    Developmental Gene Expression 5
    Gene Ontology 9
    Phenotypes 13
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory