Tsga13 MGI Mouse Gene Detail - MGI:1891413

Symbol

Tsga13
Name

testis specific gene A13
Synonyms

1700023D02Rik

Feature Type

protein coding gene
IDs

MGI:1891413
NCBI Gene: 116732
Alliance

gene page
Transcription Start Sites

1 TSS

Sequence Map

Chr6:30873916-30892508 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 6, 12.54 cM
Mapping Data

1 experiment

SNPs within 2kb

419 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1891413	protein coding gene	Chr6:30873915-30902089 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0030546	protein coding gene	Chr6:28794873-28816202 (-)
A/J	MGP_AJ_G0030519	protein coding gene	Chr6:27584240-27605594 (-)
AKR/J	MGP_AKRJ_G0030446	protein coding gene	Chr6:28510609-28529053 (-)
BALB/cJ	MGP_BALBcJ_G0030529	protein coding gene	Chr6:27702532-27722017 (-)
C3H/HeJ	MGP_C3HHeJ_G0030242	protein coding gene	Chr6:28510575-28530522 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0030983	protein coding gene	Chr6:29619354-29637828 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0028194	protein coding gene	Chr6:25744473-25763914 (-)
CAST/EiJ	MGP_CASTEiJ_G0029644	protein coding gene	Chr6:28293788-28312252 (-)
CBA/J	MGP_CBAJ_G0030220	protein coding gene	Chr6:30787885-30808396 (-)
DBA/2J	MGP_DBA2J_G0030364	protein coding gene	Chr6:27485063-27504853 (-)
FVB/NJ	MGP_FVBNJ_G0030318	protein coding gene	Chr6:27279211-27297732 (-)
LP/J	MGP_LPJ_G0030451	protein coding gene	Chr6:28984173-29003875 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0030354	protein coding gene	Chr6:33183973-33204707 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0031013	protein coding gene	Chr6:28393486-28412700 (-)
PWK/PhJ	MGP_PWKPhJ_G0029358	protein coding gene	Chr6:27065598-27084283 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0029194	protein coding gene	Chr6:28091200-28114765 (-)
WSB/EiJ	MGP_WSBEiJ_G0029720	protein coding gene	Chr6:28323446-28344985 (-)

Human Ortholog

TSGA13, testis specific 13

Vertebrate Orthologs

2

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

TSGA13, testis specific 13
Links

HGNC:12369

NCBI Gene ID: 114960

neXtProt AC: NX_Q96PP4

UniProt: Q96PP4
Chr Location

7q32.2; chr7:130668643-130687432 (-) GRCh38

MGI Vertebrate Homology

Tsga13 stringent orthology
1 human;1 mouse;1 rat
HCOP

vertebrate homology predictions: TSGA13
Gene Tree

Tsga13

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Phenotype Summary

3 phenotypes from 2 alleles in 2 genetic backgrounds
4 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

3
Endonuclease-mediated

1
Targeted

2
Incidental Mutations

APF
Find Mice (IMSR)

9 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

Male mice homozygous for a mutation are viable and show normal fertility.

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

10

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

43
RefSeq

14
UniProt

1
CCDS

CCDS19980.1

Ensembl

ENSMUSG00000039032 (Evidence)
NCBI Gene

116732

			Length	Strain/Species	Flank
genomic	ENSMUSG00000039032	Ensembl Gene Model \| MGI Sequence Detail	18593	C57BL/6J	± kb
transcript	ENSMUST00000048580	Ensembl \| MGI Sequence Detail	1141	Not Applicable
polypeptide	ENSMUSP00000040894	Ensembl \| MGI Sequence Detail	273	Not Applicable

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UniProt

1 Sequence
Protein Ontology

PR:000016722 testis-specific gene 13 protein

(term hierarchy)
InterPro Domains

IPR029241 Testis-specific gene 13 protein

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All nucleic 10

cDNA 10

Microarray probesets 2

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MGI:1923667

Summaries

All 21

Phenotypes 4
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

TSS for Tsga13:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr60144	Chr6:30892487-30892525 (-)	2 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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