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Pxmp4 Gene Detail
Summary
  • Symbol
    Pxmp4
  • Name
    peroxisomal membrane protein 4
  • Synonyms
    3010018P03Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1891701
    NCBI Gene: 59038
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:154427678-154445592 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 76.79 cM, cytoband H2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    507 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1891701
 protein coding gene Chr2:154427678-154445628 (-)
129S1/SvImJ MGP_129S1SvImJ_G0026720
 protein coding gene Chr2:159348456-159366372 (-)
A/J MGP_AJ_G0026686
 protein coding gene Chr2:152985974-153004316 (-)
AKR/J MGP_AKRJ_G0026657
 protein coding gene Chr2:157444035-157462693 (-)
BALB/cJ MGP_BALBcJ_G0026695
 protein coding gene Chr2:153285847-153304806 (-)
C3H/HeJ MGP_C3HHeJ_G0026438
 protein coding gene Chr2:157799962-157820273 (-)
C57BL/6NJ MGP_C57BL6NJ_G0027144
 protein coding gene Chr2:163993367-164014305 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0024514
 protein coding gene Chr2:146517870-146535931 (-)
CAST/EiJ MGP_CASTEiJ_G0025899
 protein coding gene Chr2:158111305-158133435 (-)
CBA/J MGP_CBAJ_G0026415
 protein coding gene Chr2:169961559-169983480 (-)
DBA/2J MGP_DBA2J_G0026552
 protein coding gene Chr2:152205307-152223766 (-)
FVB/NJ MGP_FVBNJ_G0026519
 protein coding gene Chr2:150604527-150623265 (-)
LP/J MGP_LPJ_G0026657
 protein coding gene Chr2:159461348-159480533 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0026540
 protein coding gene Chr2:174008768-174027736 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0027200
 protein coding gene Chr2:157314303-157334935 (-)
PWK/PhJ MGP_PWKPhJ_G0025633
 protein coding gene Chr2:151694471-151713819 (-)
SPRET/EiJ MGP_SPRETEiJ_G0025436
 protein coding gene Chr2:156272769-156292381 (-)
WSB/EiJ MGP_WSBEiJ_G0025969
 protein coding gene Chr2:158236076-158257384 (-)



Homology
more
  • Human Ortholog
    PXMP4, peroxisomal membrane protein 4
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PXMP4, peroxisomal membrane protein 4
  • Synonyms
    PMP24
  • Links
    NCBI Gene ID: 11264
    neXtProt AC: NX_Q9Y6I8
    UniProt: Q9Y6I8

  • Chr Location
    20q11.22; chr20:33702758-33720319 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele exhibit mildly elevated phytanic acid levels in the liver when fed a standard chow.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    5
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    49
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 59038 NCBI Gene Model | MGI Sequence Detail 17915 C57BL/6J ±  kb
    transcript NM_001418214 RefSeq | MGI Sequence Detail 3693 C57BL/6  
    polypeptide Q9JJW0 UniProt | EBI | MGI Sequence Detail 212 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 49
      cDNA 49

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGI:1915318
    References
    more
    • Summaries
      All 36
      Gene Ontology 5
      Phenotypes 11
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory