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C2cd2 Gene Detail
Summary
  • Symbol
    C2cd2
  • Name
    C2 calcium-dependent domain containing 2
  • Synonyms
    5830404H04Rik, ORF25
  • Feature Type
    protein coding gene
  • IDs
    MGI:1891883
    NCBI Gene: 207781
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:97656409-97727248 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 57.70 cM, cytoband C4
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1168 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1891883
 protein coding gene Chr16:97656409-97763798 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023095
 protein coding gene Chr16:99310550-99379994 (-)
A/J MGP_AJ_G0023063
 protein coding gene Chr16:94621501-94689412 (-)
AKR/J MGP_AKRJ_G0023033
 protein coding gene Chr16:97545307-97611252 (-)
BALB/cJ MGP_BALBcJ_G0023065
 protein coding gene Chr16:95170919-95237328 (-)
C3H/HeJ MGP_C3HHeJ_G0022826
 protein coding gene Chr16:98058687-98126229 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023512
 protein coding gene Chr16:102405396-102482003 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021013
 protein coding gene Chr16:92449133-92522090 (-)
CAST/EiJ MGP_CASTEiJ_G0022346
 protein coding gene Chr16:98871737-98939762 (-)
CBA/J MGP_CBAJ_G0022795
 protein coding gene Chr16:106857992-106933410 (-)
DBA/2J MGP_DBA2J_G0022929
 protein coding gene Chr16:94480475-94548387 (-)
FVB/NJ MGP_FVBNJ_G0022903
 protein coding gene Chr16:93640077-93706814 (-)
LP/J MGP_LPJ_G0022999
 protein coding gene Chr16:98960348-99027563 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022924
 protein coding gene Chr16:110997041-111066342 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023530
 protein coding gene Chr16:98073489-98139918 (-)
PWK/PhJ MGP_PWKPhJ_G0022090
 protein coding gene Chr16:94815542-94883074 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021920
 protein coding gene Chr16:97575674-97646751 (-)
WSB/EiJ MGP_WSBEiJ_G0022396
 protein coding gene Chr16:98355524-98425191 (-)



Homology
more
  • Human Ortholog
    C2CD2, C2 calcium dependent domain containing 2
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    C2CD2, C2 calcium dependent domain containing 2
  • Synonyms
    C21orf25, C21orf258, TMEM24L
  • Links
    NCBI Gene ID: 25966
    neXtProt AC: NX_Q9Y426
    UniProt: Q9Y426

  • Chr Location
    21q22.3; chr21:41885112-41954018 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    775
  • Tissues
    68
  • cDNA Data
    68
  • Literature Summary
    3
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 207781 NCBI Gene Model | MGI Sequence Detail 70840 C57BL/6J ±  kb
    transcript NM_174847 RefSeq | MGI Sequence Detail 6568 C57BL/6  
    polypeptide E9Q3C1 UniProt | EBI | MGI Sequence Detail 696 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 73
      cDNA 69
      Primer pair 3
      Other 1

      Microarray probesets 6
    Other
    Accession IDs
    less
    MGI:1922009, MGI:2146404, MGI:2146434, MGI:2652101
    References
    more
    • Summaries
      All 40
      Developmental Gene Expression 3
      Gene Ontology 1
      Phenotypes 11
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory