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Cystm1 Gene Detail
Summary
  • Symbol
    Cystm1
  • Name
    cysteine-rich transmembrane module containing 1
  • Synonyms
    0610010O12Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913310
    NCBI Gene: 66060
  • Alliance
    gene page
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:36481677-36536032 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 18, 19.46 cM, cytoband B3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1196 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913310
 protein coding gene Chr18:36475573-36536150 (+)
129S1/SvImJ MGP_129S1SvImJ_G0024276
 protein coding gene Chr18:34737196-34794893 (+)
A/J MGP_AJ_G0024242
 protein coding gene Chr18:33519918-33578480 (+)
AKR/J MGP_AKRJ_G0024210
 protein coding gene Chr18:34446704-34505136 (+)
BALB/cJ MGP_BALBcJ_G0024242
 protein coding gene Chr18:33569311-33627092 (+)
C3H/HeJ MGP_C3HHeJ_G0024009
 protein coding gene Chr18:34523795-34581787 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024683
 protein coding gene Chr18:35953694-36013616 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0022123
 protein coding gene Chr18:33613250-33671116 (+)
CAST/EiJ MGP_CASTEiJ_G0023484
 protein coding gene Chr18:34515452-34575731 (+)
CBA/J MGP_CBAJ_G0023977
 protein coding gene Chr18:37031951-37094453 (+)
DBA/2J MGP_DBA2J_G0024109
 protein coding gene Chr18:33143741-33202211 (+)
FVB/NJ MGP_FVBNJ_G0024076
 protein coding gene Chr18:32843789-32901518 (+)
LP/J MGP_LPJ_G0024191
 protein coding gene Chr18:34768586-34827819 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0024104
 protein coding gene Chr18:38235106-38296166 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024732
 protein coding gene Chr18:34323006-34380409 (+)
PWK/PhJ MGP_PWKPhJ_G0023228
 protein coding gene Chr18:33389190-33448182 (+)
SPRET/EiJ MGP_SPRETEiJ_G0023035
 protein coding gene Chr18:34576323-34634815 (+)
WSB/EiJ MGP_WSBEiJ_G0023547
 protein coding gene Chr18:34245185-34304632 (+)



Homology
more
  • Human Ortholog
    CYSTM1, cysteine rich transmembrane module containing 1
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CYSTM1, cysteine rich transmembrane module containing 1
  • Synonyms
    C5orf32, ORF1-FL49
  • Links
    NCBI Gene ID: 84418
    neXtProt AC: NX_Q9H1C7
    UniProt: Q9H1C7

  • Chr Location
    5q31.3; chr5:140175156-140282052 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    14 phenotypes from 1 allele in 1 genetic background
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    91
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 66060 NCBI Gene Model | MGI Sequence Detail 54356 C57BL/6J ±  kb
    transcript NM_001368637 RefSeq | MGI Sequence Detail 754 C57BL/6  
    polypeptide Q8K353 UniProt | EBI | MGI Sequence Detail 104 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      4 Sequences
    • Protein Ontology
      PR:000030764 cysteine-rich and transmembrane domain-containing protein 1
      (term hierarchy)
    • InterPro Domains
      IPR043240 Cysteine-rich and transmembrane domain-containing protein 1-like
    • GlyGen
      Q8K353 1 site
    Molecular
    Reagents
    less
    • All nucleic 91
      cDNA 91

      Microarray probesets 6
    References
    more
    • Summaries
      All 32
      Gene Ontology 1
      Phenotypes 11
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/17/2024
    MGI 6.24     		The Jackson Laboratory