1110006O24Rik Gene Detail

Summary

• Symbol
  1110006O24Rik
• Name
  RIKEN cDNA 1110006O24 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1913373
  NCBI Gene: 66123
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:115769108-115769875 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 56.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  89 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1913373	lncRNA gene	Chr5:115769103-115769877 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0006772	lincRNA gene	Chr5:118537744-118538511 (-)
A/J	MGP_AJ_G0006766	lincRNA gene	Chr5:113809738-113810505 (-)
AKR/J	MGP_AKRJ_G0006736	lincRNA gene	Chr5:117456307-117457074 (-)
BALB/cJ	MGP_BALBcJ_G0006742	lincRNA gene	Chr5:115208894-115209661 (-)
C3H/HeJ	MGP_C3HHeJ_G0006687	lincRNA gene	Chr5:117971858-117972625 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0006907	lincRNA gene	Chr5:123090981-123091748 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006162	lincRNA gene	Chr5:108582735-108583495 (-)
CAST/EiJ	MGP_CASTEiJ_G0006610	lincRNA gene	Chr5:116918856-116919619 (-)
CBA/J	MGP_CBAJ_G0006669	lincRNA gene	Chr5:127818328-127819095 (-)
DBA/2J	MGP_DBA2J_G0006689	lincRNA gene	Chr5:113898012-113898779 (-)
FVB/NJ	MGP_FVBNJ_G0006713	lincRNA gene	Chr5:112716686-112717453 (-)
LP/J	MGP_LPJ_G0006773	lincRNA gene	Chr5:119098699-119099466 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006697	lincRNA gene	Chr5:132118359-132119126 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006909	lincRNA gene	Chr5:116935870-116936637 (-)
PWK/PhJ	MGP_PWKPhJ_G0006549	lincRNA gene	Chr5:112544596-112545356 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0006455	lincRNA gene	Chr5:114478174-114478953 (-)
WSB/EiJ	MGP_WSBEiJ_G0006661	lincRNA gene	Chr5:117530758-117531525 (-)

Homology

• Gene Tree
  1110006O24Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  4
• Radiation induced
  1
• Genomic Mutations
  2 involving 1110006O24Rik
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000107121 (Evidence)
• NCBI Gene
  66123

Representative Sequences			Length	Strain/Species
genomic	66123	NCBI Gene Model | MGI Sequence Detail	768	C57BL/6J
transcript	NR_027810	RefSeq | MGI Sequence Detail	768	C57BL/6
polypeptide	Q9JJ86	UniProt | EBI | MGI Sequence Detail	82	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 1

References

• Summaries
  All 20

  Phenotypes 8
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 1110006O24Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr52821	Chr5:115769839-115769888 (-)	11 bp