Prr13 Gene Detail

Summary

• Symbol
  Prr13
• Name
  proline rich 13
• Synonyms
  1110020C13Rik, 2010324E22Rik

• Feature Type
  protein coding gene
• IDs
  MGI:1913401
  NCBI Gene: 66151
• Alliance
  gene page
• Transcription Start Sites
  21 TSS

Location &
Maps

• Sequence Map
  Chr15:102367605-102371241 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 57.60 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  150 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1913401	protein coding gene	Chr15:102367463-102371241 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0022414	protein coding gene	Chr15:104644885-104648663 (+)
A/J	MGP_AJ_G0022376	protein coding gene	Chr15:100521548-100525321 (+)
AKR/J	MGP_AKRJ_G0022351	protein coding gene	Chr15:103568600-103572378 (+)
BALB/cJ	MGP_BALBcJ_G0022380	protein coding gene	Chr15:100578769-100582588 (+)
C3H/HeJ	MGP_C3HHeJ_G0022147	protein coding gene	Chr15:103645496-103649339 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0022829	protein coding gene	Chr15:108537475-108541286 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0020352	protein coding gene	Chr15:96300189-96303080 (+)
CAST/EiJ	MGP_CASTEiJ_G0021673	protein coding gene	Chr15:104521918-104525681 (+)
CBA/J	MGP_CBAJ_G0022116	protein coding gene	Chr15:112348525-112352301 (+)
DBA/2J	MGP_DBA2J_G0022247	protein coding gene	Chr15:99807491-99811324 (+)
FVB/NJ	MGP_FVBNJ_G0022223	protein coding gene	Chr15:98869289-98873094 (+)
LP/J	MGP_LPJ_G0022316	protein coding gene	Chr15:104793202-104796980 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0022245	protein coding gene	Chr15:115901375-115905142 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0022841	protein coding gene	Chr15:103602982-103608303 (+)
PWK/PhJ	MGP_PWKPhJ_G0021413	protein coding gene	Chr15:99967086-99970912 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0021245	protein coding gene	Chr15:103447300-103451196 (+)
WSB/EiJ	MGP_WSBEiJ_G0021723	protein coding gene	Chr15:104233938-104237725 (+)

Homology

• Human Ortholog
  PRR13, proline rich 13

• Vertebrate Orthologs
  3

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  PRR13, proline rich 13
  
• Synonyms
  TXR1
• Links
  HGNC:24528

  NCBI Gene ID: 54458

  neXtProt AC: NX_Q9NZ81

  UniProt: Q9NZ81

  
  
• Chr Location
  12q13.13; chr12:53441678-53446645 (+)  GRCh38

---

• MGI Vertebrate Homology
  Prr13 stringent orthology
  1 human;1 mouse;1 rat;1 zebrafish
  
• HCOP
  vertebrate homology predictions: PRR13
• Gene Tree
  Prr13
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  27 phenotype references
  

• All Mutations and Alleles
  35
• Chemically induced (other)
  1
• Gene trapped
  29
• Radiation induced
  2
• Targeted
  3
• Genomic Mutations
  3 involving Prr13
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  27 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  4
• GO References
  3

Expression

• Assay Results
  706
• cDNA Data
  113

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas
• Other Vertebrate Links
  ZFIN prr13

Sequences &
Gene Models

• All Sequences
  53
• RefSeq
  4
• UniProt
  2
• CCDS
  CCDS27883.1

• Ensembl
  ENSMUSG00000023048 (Evidence)
• NCBI Gene
  66151

Representative Sequences			Length	Strain/Species
genomic	66151	NCBI Gene Model | MGI Sequence Detail	3637	C57BL/6J
transcript	NM_025385	RefSeq | MGI Sequence Detail	1229	C57BL/6
polypeptide	Q9CQJ5	UniProt | EBI | MGI Sequence Detail	137	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• Protein Ontology
  PR:000013299 proline-rich protein 13
  (term hierarchy)

Molecular
Reagents

• All nucleic 113

  cDNA 113

  
  

  Microarray probesets 4

Other
Accession IDs

MGI:1919350

References

• Summaries
  All 51

  Diseases 1

  Gene Ontology 3

  Phenotypes 27
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for Prr13:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr133402	Chr15:102367601-102367618 (+)	5 bp
Tssr133403	Chr15:102367628-102367655 (+)	37 bp
Tssr133404	Chr15:102367918-102367945 (+)	327 bp
Tssr133405	Chr15:102368493-102368500 (+)	892 bp
Tssr133406	Chr15:102368511-102368543 (+)	922 bp
Tssr133407	Chr15:102368548-102368557 (+)	948 bp
Tssr133408	Chr15:102368801-102368816 (+)	1,204 bp
Tssr133409	Chr15:102368838-102368853 (+)	1,241 bp
Tssr133410	Chr15:102368875-102368906 (+)	1,286 bp
Tssr133411	Chr15:102368913-102368925 (+)	1,314 bp
Tssr133412	Chr15:102368935-102368954 (+)	1,340 bp
Tssr133413	Chr15:102368966-102369013 (+)	1,385 bp
Tssr133414	Chr15:102369027-102369051 (+)	1,434 bp
Tssr133415	Chr15:102369772-102369803 (+)	2,183 bp
Tssr133416	Chr15:102370599-102370628 (+)	3,009 bp
Tssr133417	Chr15:102370653-102370678 (+)	3,061 bp
Tssr133418	Chr15:102370687-102370698 (+)	3,088 bp
Tssr133419	Chr15:102370733-102370746 (+)	3,135 bp
Tssr133420	Chr15:102370805-102370814 (+)	3,205 bp
Tssr133421	Chr15:102370864-102370878 (+)	3,266 bp
Tssr133422	Chr15:102370954-102370971 (+)	3,358 bp