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Rtl8a Gene Detail
Summary
  • Symbol
    Rtl8a
  • Name
    retrotransposon Gag like 8A
  • Synonyms
    1110012O05Rik, Cxx1a, Mar8.2A/B, Mart8b
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913408
    NCBI Gene: 66158
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:52644455-52645649 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 29.87 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    96 from dbSNP Build 142
  • Strain Annotations
    15
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913408
 protein coding gene ChrX:52644455-52645730 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035727
 protein coding gene ChrX:48908340-48909488 (-)
A/J MGP_AJ_G0035708
 protein coding gene ChrX:48820731-48821895 (-)
AKR/J MGP_AKRJ_G0035630
 protein coding gene ChrX:50158467-50165687 (-)
BALB/cJ MGP_BALBcJ_G0035694
 protein coding gene ChrX:48230713-48231883 (+)
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ MGP_CAROLIEiJ_G0033076
 protein coding gene ChrX:46200774-46201980 (-)
CAST/EiJ MGP_CASTEiJ_G0034690
 protein coding gene ChrX:36478882-36480066 (+)
CBA/J MGP_CBAJ_G0035372
 protein coding gene ChrX:51465379-51466488 (-)
DBA/2J MGP_DBA2J_G0035529
 protein coding gene ChrX:48505940-48507114 (+)
FVB/NJ MGP_FVBNJ_G0035478
 protein coding gene ChrX:48127223-48128387 (+)
LP/J MGP_LPJ_G0035616
 protein coding gene ChrX:49283620-49284621 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035516
 protein coding gene ChrX:53026959-53032375 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036243
 protein coding gene ChrX:48754930-48756165 (+)
PWK/PhJ MGP_PWKPhJ_G0034391
 protein coding gene ChrX:36037840-36038990 (-)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0034835
 protein coding gene ChrX:48350157-48389130 (-)



Homology
more
  • Human Ortholog
    RTL8A, retrotransposon Gag like 8A
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RTL8A, retrotransposon Gag like 8A
  • Synonyms
    CXX1b, FAM127B, MAR8A, SIRH6
  • Links
    NCBI Gene ID: 26071
    neXtProt AC: NX_Q9BWD3
    UniProt: Q9BWD3

  • Chr Location
    Xq26.3; chrX:135050932-135052196 (-)  GRCh38
  • Human Ortholog
    RTL8B, retrotransposon Gag like 8B
  • Synonyms
    CXX1c, FAM127C, MAR8B, SIRH4
  • Links
    NCBI Gene ID: 441518
    neXtProt AC: NX_Q17RB0
    UniProt: Q17RB0

  • Chr Location
    Xq26.3; chrX:135020513-135022542 (-)  GRCh38
  • Human Ortholog
    RTL8C, retrotransposon Gag like 8C
  • Synonyms
    CXX1, FAM127A, Mar8, MAR8C, Mart8, MART8C, SIRH5
  • Links
    NCBI Gene ID: 8933
    neXtProt AC: NX_A6ZKI3
    UniProt: A6ZKI3

  • Chr Location
    Xq26.3; chrX:135032355-135033546 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    800
  • Tissues
    16
  • cDNA Data
    3
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000067925 Ensembl Gene Model | MGI Sequence Detail 1195 C57BL/6J ±  kb
transcript ENSMUST00000088779 Ensembl | MGI Sequence Detail 1195 Not Applicable  
polypeptide ENSMUSP00000086158 Ensembl | MGI Sequence Detail 113 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR032549 Domain of unknown function DUF4939
    IPR032567 LDOC1-related
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 2
Other
Accession IDs
less
MGI:5906153
References
more
  • Summaries
    All 19
    Developmental Gene Expression 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:336757 Mohan HM, et al., RTL8 promotes nuclear localization of UBQLN2 to subnuclear compartments associated with protein quality control. Cell Mol Life Sci. 2022 Mar 5;79(3):176
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory