About   Help   FAQ
Smim30 Gene Detail
Summary
  • Symbol
    Smim30
  • Name
    small integral membrane protein 30
  • Synonyms
    2610001J05Rik, C79299
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913770
    NCBI Gene: 66520
  • Alliance
    gene page
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:13867734-13871517 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 5.80 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    253 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913770
 protein coding gene Chr6:13867734-13871517 (-)
129S1/SvImJ MGP_129S1SvImJ_G0030462
 protein coding gene Chr6:10962274-10966057 (-)
A/J MGP_AJ_G0030435
 protein coding gene Chr6:10535694-10539477 (-)
AKR/J MGP_AKRJ_G0030362
 protein coding gene Chr6:10889548-10893334 (-)
BALB/cJ MGP_BALBcJ_G0030444
 protein coding gene Chr6:10524648-10528431 (-)
C3H/HeJ MGP_C3HHeJ_G0030158
 protein coding gene Chr6:10799750-10803533 (-)
C57BL/6NJ MGP_C57BL6NJ_G0030899
 protein coding gene Chr6:11356623-11360406 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0028110
 protein coding gene Chr6:9711513-9715353 (-)
CAST/EiJ MGP_CASTEiJ_G0029560
 protein coding gene Chr6:10650721-10654519 (-)
CBA/J MGP_CBAJ_G0030136
 protein coding gene Chr6:11654471-11658254 (-)
DBA/2J MGP_DBA2J_G0030280
 protein coding gene Chr6:10457620-10461403 (-)
FVB/NJ MGP_FVBNJ_G0030234
 protein coding gene Chr6:10360774-10364559 (-)
LP/J MGP_LPJ_G0030367
 protein coding gene Chr6:10907168-10910951 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0030270
 protein coding gene Chr6:12456665-12460429 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030929
 protein coding gene Chr6:10780017-10783802 (-)
PWK/PhJ MGP_PWKPhJ_G0029274
 protein coding gene Chr6:10151954-10155770 (-)
SPRET/EiJ MGP_SPRETEiJ_G0029110
 protein coding gene Chr6:10647804-10651554 (-)
WSB/EiJ MGP_WSBEiJ_G0029636
 protein coding gene Chr6:10721624-10725409 (-)



Homology
more
  • Human Ortholog
    SMIM30, small integral membrane protein 30
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SMIM30, small integral membrane protein 30
  • Synonyms
    LINC00998, MAVI1
  • Links
    NCBI Gene ID: 401397
    UniProt: A4D0T7

  • Chr Location
    7q31.1; chr7:113116718-113118560 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    10
  • GO References
    5
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    707
  • Tissues
    1
  • cDNA Data
    12
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 66520 NCBI Gene Model | MGI Sequence Detail 3784 C57BL/6J ±  kb
transcript NM_001352887 RefSeq | MGI Sequence Detail 3177 C57BL/6  
polypeptide F2Z3Y9 UniProt | EBI | MGI Sequence Detail 59 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR031742 Protein of unknown function DUF4730
Molecular
Reagents
less
  • All nucleic 12
    cDNA 12

    Microarray probesets 6
Other
Accession IDs
less
MGI:2141749, MGI:6730149
References
more
  • Summaries
    All 28
    Developmental Gene Expression 1
    Gene Ontology 5
    Phenotypes 2
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory