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Smim5 Gene Detail
Summary
  • Symbol
    Smim5
  • Name
    small integral membrane protein 5
  • Synonyms
    2210020M01Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913778
    NCBI Gene: 66528
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:115790792-115797095 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 80.91 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    246 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913778
 protein coding gene Chr11:115789575-115797095 (+)
129S1/SvImJ MGP_129S1SvImJ_G0019405
 protein coding gene Chr11:119976275-119982586 (+)
A/J MGP_AJ_G0019374
 protein coding gene Chr11:114727528-114733868 (+)
AKR/J MGP_AKRJ_G0019344
 protein coding gene Chr11:118154546-118160848 (+)
BALB/cJ MGP_BALBcJ_G0019348
 protein coding gene Chr11:115143294-115149613 (+)
C3H/HeJ MGP_C3HHeJ_G0019154
 protein coding gene Chr11:118498256-118504562 (+)
C57BL/6NJ MGP_C57BL6NJ_G0019798
 protein coding gene Chr11:123634459-123640753 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017421
 protein coding gene Chr11:111753182-111759418 (+)
CAST/EiJ MGP_CASTEiJ_G0018709
 protein coding gene Chr11:119843919-119850230 (+)
CBA/J MGP_CBAJ_G0019126
 protein coding gene Chr11:128530649-128536960 (+)
DBA/2J MGP_DBA2J_G0019237
 protein coding gene Chr11:114150369-114156671 (+)
FVB/NJ MGP_FVBNJ_G0019229
 protein coding gene Chr11:113654038-113660961 (+)
LP/J MGP_LPJ_G0019307
 protein coding gene Chr11:120356537-120362835 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019262
 protein coding gene Chr11:127639606-127646885 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0019836
 protein coding gene Chr11:118805152-118811464 (+)
PWK/PhJ MGP_PWKPhJ_G0018473
 protein coding gene Chr11:115468057-115474400 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018266
 protein coding gene Chr11:118555999-118562296 (+)
WSB/EiJ MGP_WSBEiJ_G0018761
 protein coding gene Chr11:118772988-118779315 (+)



Homology
more
  • Human Ortholog
    SMIM5, small integral membrane protein 5
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SMIM5, small integral membrane protein 5
  • Synonyms
    C17orf109, PP12104
  • Links
    NCBI Gene ID: 643008
    neXtProt AC: NX_Q71RC9
    UniProt: Q71RC9

  • Chr Location
    17q25.1; chr17:75633434-75641406 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    742
  • Tissues
    4
  • cDNA Data
    15
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000048442 Ensembl Gene Model | MGI Sequence Detail 6304 C57BL/6J ±  kb
transcript ENSMUST00000152171 Ensembl | MGI Sequence Detail 1113 Not Applicable  
polypeptide ENSMUSP00000139148 Ensembl | MGI Sequence Detail 78 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 15
    cDNA 15

    Microarray probesets 3
References
more
  • Summaries
    All 19
    Developmental Gene Expression 1
    Gene Ontology 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory