Pphln1-ps1 Pseudogene Detail

Summary

• Symbol
  Pphln1-ps1
• Name
  periphilin 1, pseudogene 1
• Synonyms
  3110001I22Rik

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:1913848
  NCBI Gene: 66598
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr16:13489814-13496269 bp, + strand

  From MGI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  197 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1913848	pseudogene	Chr16:13489750-13496252 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0022533	protein coding gene	Chr16:10652166-10658642 (+)
A/J	MGP_AJ_G0022495	protein coding gene	Chr16:10070314-10076790 (+)
AKR/J	MGP_AKRJ_G0022471	protein coding gene	Chr16:10507338-10513814 (+)
BALB/cJ	MGP_BALBcJ_G0022499	protein coding gene	Chr16:10234693-10241170 (+)
C3H/HeJ	MGP_C3HHeJ_G0022266	protein coding gene	Chr16:10600566-10608232 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0022948	protein coding gene	Chr16:10819398-10825874 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0020468	protein coding gene	Chr16:10164677-10171251 (+)
CAST/EiJ	MGP_CASTEiJ_G0021793	protein coding gene	Chr16:10606195-10612668 (+)
CBA/J	MGP_CBAJ_G0022235	protein coding gene	Chr16:11307645-11314340 (+)
DBA/2J	MGP_DBA2J_G0022366	protein coding gene	Chr16:10068298-10075550 (+)
FVB/NJ	MGP_FVBNJ_G0022342	protein coding gene	Chr16:10052235-10058711 (+)
LP/J	MGP_LPJ_G0022434	protein coding gene	Chr16:10567866-10574342 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0022364	protein coding gene	Chr16:10963829-10970305 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0022961	protein coding gene	Chr16:10484647-10491123 (+)
PWK/PhJ	MGP_PWKPhJ_G0021535	protein coding gene	Chr16:10326237-10332714 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0021363	protein coding gene	Chr16:10466952-10476321 (+)
WSB/EiJ	MGP_WSBEiJ_G0021841	protein coding gene	Chr16:10495373-10501859 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  16 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  26
• Tissues
  4
• cDNA Data
  8
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000079737 (Evidence), ENSMUSG00000121810 (Evidence)
• NCBI Gene
  66598

Representative Sequences			Length	Strain/Species
genomic	66598	NCBI Gene Model | MGI Sequence Detail	6503	C57BL/6J
transcript	NR_175936	RefSeq | MGI Sequence Detail	1748	ZRU/MplStud
polypeptide	Q9CZ70	UniProt | EBI | MGI Sequence Detail	312	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR028851 Periphilin-1

Molecular
Reagents

• All nucleic 9

  cDNA 8

  Primer pair 1

Other
Accession IDs

MGI:7281086

References

• Summaries
  All 18

  Developmental Gene Expression 1

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:307963 Mrowiec K, et al., The periphilin 1-like BFAR isoform 3 is highly expressed in transcriptionally silent oocytes and involved in RNA metabolism. Biochim Biophys Acta Mol Cell Res. 2021 Sep;1868(10):119086

TSS for Pphln1-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137141	Chr16:13489786-13489801 (+)	-20 bp
Tssr137142	Chr16:13489808-13489842 (+)	11 bp
Tssr137143	Chr16:13489844-13489896 (+)	56 bp
Tssr137144	Chr16:13489897-13489909 (+)	89 bp