Hoxaas2 Gene Detail

Summary

• Symbol
  Hoxaas2
• Name
  Hoxa cluster antisense RNA 2
• Synonyms
  2810043O09Rik, 5730446D14Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1913890
  NCBI Gene: 105242657
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:52142654-52146431 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 25.40 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  62 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1913890	lncRNA gene	Chr6:52142654-52146544 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015630	unclassified non-coding RNA gene	Chr6:51401076-51404964 (+)
A/J	MGP_AJ_G0015606	unclassified non-coding RNA gene	Chr6:49001182-49005093 (+)
AKR/J	MGP_AKRJ_G0015569	unclassified non-coding RNA gene	Chr6:50706648-50710536 (+)
BALB/cJ	MGP_BALBcJ_G0015568	unclassified non-coding RNA gene	Chr6:49360550-49364439 (+)
C3H/HeJ	MGP_C3HHeJ_G0015390	unclassified non-coding RNA gene	Chr6:50715382-50719287 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016021	unclassified non-coding RNA gene	Chr6:52538648-52542538 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013755	unclassified non-coding RNA gene	Chr6:46649267-46653176 (+)
CAST/EiJ	MGP_CASTEiJ_G0014946	unclassified non-coding RNA gene	Chr6:50527447-50531347 (+)
CBA/J	MGP_CBAJ_G0015371	unclassified non-coding RNA gene	Chr6:54734400-54740698 (+)
DBA/2J	MGP_DBA2J_G0015465	unclassified non-coding RNA gene	Chr6:48924155-48928052 (+)
FVB/NJ	MGP_FVBNJ_G0015472	unclassified non-coding RNA gene	Chr6:48534223-48538108 (+)
LP/J	MGP_LPJ_G0015546	unclassified non-coding RNA gene	Chr6:51385851-51389739 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015495	unclassified non-coding RNA gene	Chr6:57370413-57374323 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016063	unclassified non-coding RNA gene	Chr6:50631190-50636128 (+)
PWK/PhJ	MGP_PWKPhJ_G0014730	unclassified non-coding RNA gene	Chr6:48546151-48550039 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014519	unclassified non-coding RNA gene	Chr6:49969050-49972946 (+)
WSB/EiJ	MGP_WSBEiJ_G0015050	unclassified non-coding RNA gene	Chr6:50648420-50652318 (+)

Homology

• Gene Tree
  Hoxaas2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Hoxaas2
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  734
• Tissues
  3
• cDNA Data
  3
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000056445 (Evidence)
• NCBI Gene
  105242657

Representative Sequences			Length	Strain/Species
genomic	105242657	NCBI Gene Model | MGI Sequence Detail	3778	C57BL/6J
transcript	NR_131182	RefSeq | MGI Sequence Detail	1567	C57BL/6
polypeptide	Q52KM3	UniProt | EBI | MGI Sequence Detail	135	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  Genomic 1

  cDNA 3

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:1924092

References

• Summaries
  All 22

  Developmental Gene Expression 1

  Phenotypes 8
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:207500 Berlivet S, et al., Clustering of tissue-specific sub-TADs accompanies the regulation of HoxA genes in developing limbs. PLoS Genet. 2013 Dec;9(12):e1004018

TSS for Hoxaas2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr56502	Chr6:52142683-52142695 (+)	35 bp
Tssr56503	Chr6:52143497-52143504 (+)	847 bp