About   Help   FAQ
Trappc5 Gene Detail
Summary
  • Symbol
    Trappc5
  • Name
    trafficking protein particle complex 5
  • Synonyms
    4021401A16Rik, TRS31
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913932
    NCBI Gene: 66682
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:3726477-3730921 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 1.92 cM, cytoband A1
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    183 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913932
 protein coding gene Chr8:3726299-3731255 (+)
129S1/SvImJ MGP_129S1SvImJ_G0033315
 protein coding gene Chr8:623359-628225 (+)
A/J MGP_AJ_G0033298
 protein coding gene Chr8:592605-597554 (+)
AKR/J MGP_AKRJ_G0033229
 protein coding gene Chr8:622552-627508 (+)
BALB/cJ MGP_BALBcJ_G0033298
 protein coding gene Chr8:618383-623333 (+)
C3H/HeJ MGP_C3HHeJ_G0033012
 protein coding gene Chr8:635818-640797 (+)
C57BL/6NJ MGP_C57BL6NJ_G0033808
 protein coding gene Chr8:669110-674098 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0030781
 protein coding gene Chr8:545139-550051 (+)
CAST/EiJ MGP_CASTEiJ_G0032335
 protein coding gene Chr8:633433-638388 (+)
CBA/J MGP_CBAJ_G0032985
 protein coding gene Chr8:684079-689038 (+)
DBA/2J MGP_DBA2J_G0033139
 protein coding gene Chr8:563368-568313 (+)
FVB/NJ MGP_FVBNJ_G0033086
 protein coding gene Chr8:612246-617192 (+)
LP/J MGP_LPJ_G0033231
 protein coding gene Chr8:606187-611144 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033121
 protein coding gene Chr8:662095-667072 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0033826
 protein coding gene Chr8:615426-620378 (+)
PWK/PhJ MGP_PWKPhJ_G0032045
 protein coding gene Chr8:592281-597145 (+)
SPRET/EiJ MGP_SPRETEiJ_G0031889
 protein coding gene Chr8:605078-610052 (+)
WSB/EiJ MGP_WSBEiJ_G0032448
 protein coding gene Chr8:611804-616756 (+)



Homology
more
  • Human Ortholog
    TRAPPC5, trafficking protein particle complex subunit 5
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAPPC5, trafficking protein particle complex subunit 5
  • Synonyms
    TRS31
  • Links
    NCBI Gene ID: 126003
    neXtProt AC: NX_Q8IUR0
    UniProt: Q8IUR0

  • Chr Location
    19p13.2; chr19:7680833-7687703 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    16
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    7
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 66682 NCBI Gene Model | MGI Sequence Detail 4445 C57BL/6J ±  kb
transcript NM_025701 RefSeq | MGI Sequence Detail 2072 ZRU/MplStud  
polypeptide Q9CQA1 UniProt | EBI | MGI Sequence Detail 188 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000016616 trafficking protein particle complex subunit 5
    (term hierarchy)
  • InterPro Domains
    IPR024096 NO signalling/Golgi transport ligand-binding domain superfamily
    IPR007194 Transport protein particle (TRAPP) component
    IPR016696 TRAPP I complex, subunit 5
Molecular
Reagents
less
  • All nucleic 9
    Genomic 2
    cDNA 7

    Microarray probesets 4
References
more
  • Summaries
    All 30
    Gene Ontology 6
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:320033 Kim JJ, et al., TRAPP Complexes in Secretion and Autophagy. Front Cell Dev Biol. 2016;4:20
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory