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Ccer1 Gene Detail
Summary
  • Symbol
    Ccer1
  • Name
    coiled-coil glutamate-rich protein 1
  • Synonyms
    4921510H08Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913966
    NCBI Gene: 66716
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:97528921-97530785 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 50.38 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    129 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913966
 protein coding gene Chr10:97528921-97530788 (+)
129S1/SvImJ MGP_129S1SvImJ_G0017680
 protein coding gene Chr10:99440029-99441896 (+)
A/J MGP_AJ_G0017659
 protein coding gene Chr10:95862897-95864764 (+)
AKR/J MGP_AKRJ_G0017619
 protein coding gene Chr10:98584698-98586565 (+)
BALB/cJ MGP_BALBcJ_G0017623
 protein coding gene Chr10:96158140-96160007 (+)
C3H/HeJ MGP_C3HHeJ_G0017446
 protein coding gene Chr10:98619833-98621700 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018079
 protein coding gene Chr10:102874251-102876118 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0015761
 protein coding gene Chr10:91364009-91365863 (+)
CAST/EiJ MGP_CASTEiJ_G0017009
 protein coding gene Chr10:98685511-98687379 (+)
CBA/J MGP_CBAJ_G0017415
 protein coding gene Chr10:106910564-106912431 (+)
DBA/2J MGP_DBA2J_G0017521
 protein coding gene Chr10:94928569-94930436 (+)
FVB/NJ MGP_FVBNJ_G0017514
 protein coding gene Chr10:94187848-94189715 (+)
LP/J MGP_LPJ_G0017595
 protein coding gene Chr10:100032038-100033905 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017544
 protein coding gene Chr10:108087861-108089728 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018117
 protein coding gene Chr10:98518948-98520815 (+)
PWK/PhJ MGP_PWKPhJ_G0016791
 protein coding gene Chr10:95086974-95088881 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016580
 protein coding gene Chr10:97395396-97397260 (+)
WSB/EiJ MGP_WSBEiJ_G0017069
 protein coding gene Chr10:98529781-98531651 (+)



Homology
more
  • Human Ortholog
    CCER1, coiled-coil glutamate rich protein 1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCER1, coiled-coil glutamate rich protein 1
  • Synonyms
    C12orf12
  • Links
    NCBI Gene ID: 196477
    neXtProt AC: NX_Q8TC90
    UniProt: Q8TC90

  • Chr Location
    12q21.33; chr12:90905622-90955176 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Targeted
    1
  • Genomic Mutations
    1 involving Ccer1
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
    8 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    805
  • Tissues
    11
  • cDNA Data
    12
  • Literature Summary
    1
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000047025 Ensembl Gene Model | MGI Sequence Detail 1865 C57BL/6J ±  kb
transcript ENSMUST00000060703 Ensembl | MGI Sequence Detail 1865 Not Applicable  
polypeptide ENSMUSP00000050554 Ensembl | MGI Sequence Detail 403 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000031767 coiled-coil domain-containing glutamate-rich protein 1
    (term hierarchy)
  • InterPro Domains
    IPR027889 Coiled-coil domain-containing glutamate-rich protein family 1
    IPR052696 Coiled-coil domain-containing protein
Molecular
Reagents
less
  • All nucleic 12
    cDNA 12

    Microarray probesets 3
Other
Accession IDs
less
MGI:2143788
References
more
  • Summaries
    All 26
    Developmental Gene Expression 1
    Phenotypes 6
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:344358 Qin D, et al., Phase-separated CCER1 coordinates the histone-to-protamine transition and male fertility. Nat Commun. 2023 Dec 11;14(1):8209
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory