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Ccdc96 Gene Detail
Summary
  • Symbol
    Ccdc96
  • Name
    coiled-coil domain containing 96
  • Synonyms
    4921513E08Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913967
    NCBI Gene: 66717
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:36641932-36645515 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 19.14 cM, cytoband B2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    125 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913967
 protein coding gene Chr5:36641932-36645516 (+)
129S1/SvImJ MGP_129S1SvImJ_G0029490
 protein coding gene Chr5:34820667-34824251 (+)
A/J MGP_AJ_G0029457
 protein coding gene Chr5:33678439-33682025 (+)
AKR/J MGP_AKRJ_G0029406
 protein coding gene Chr5:34946506-34950092 (+)
BALB/cJ MGP_BALBcJ_G0029467
 protein coding gene Chr5:34187642-34191228 (+)
C3H/HeJ MGP_C3HHeJ_G0029189
 protein coding gene Chr5:34968592-34972178 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029921
 protein coding gene Chr5:36730790-36734374 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027158
 protein coding gene Chr5:31422311-31426233 (+)
CAST/EiJ MGP_CASTEiJ_G0028598
 protein coding gene Chr5:34090695-34094291 (+)
CBA/J MGP_CBAJ_G0029157
 protein coding gene Chr5:37610049-37613635 (+)
DBA/2J MGP_DBA2J_G0029305
 protein coding gene Chr5:33816565-33820151 (+)
FVB/NJ MGP_FVBNJ_G0029264
 protein coding gene Chr5:33296021-33299607 (+)
LP/J MGP_LPJ_G0029390
 protein coding gene Chr5:35271592-35275176 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029294
 protein coding gene Chr5:38365824-38369410 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029954
 protein coding gene Chr5:34449421-34453007 (+)
PWK/PhJ MGP_PWKPhJ_G0028323
 protein coding gene Chr5:32993494-32997078 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028154
 protein coding gene Chr5:33921108-33924667 (+)
WSB/EiJ MGP_WSBEiJ_G0028679
 protein coding gene Chr5:34534464-34538048 (+)



Homology
more
  • Human Ortholog
    CFAP184, cilia and flagella associated protein 184
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CFAP184, cilia and flagella associated protein 184
  • Synonyms
    CCDC96
  • Links
    NCBI Gene ID: 257236
    neXtProt AC: NX_Q2M329
    UniProt: Q2M329

  • Chr Location
    4p16.1; chr4:7040849-7043001 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    22 phenotype references
  • All Mutations and Alleles
    9
  • Chemically induced (ENU)
    1
  • Chemically induced (other)
    2
  • Endonuclease-mediated
    1
  • Radiation induced
    4
  • Spontaneous
    1
  • Genomic Mutations
    8 involving Ccdc96
  • Incidental Mutations
    Mutagenetix , APF , CvDC
  • Find Mice (IMSR)
    21 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    3
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    713
  • Tissues
    1
  • cDNA Data
    18
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 66717 NCBI Gene Model | MGI Sequence Detail 3584 C57BL/6J ±  kb
transcript NM_025725 RefSeq | MGI Sequence Detail 3584 C57BL/6  
polypeptide Q9CR92 UniProt | EBI | MGI Sequence Detail 584 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000032735 coiled-coil domain-containing protein 96
    (term hierarchy)
  • InterPro Domains
    IPR025254 CCDC113/CCDC96, coiled-coil
    IPR051885 Coiled-coil domain-containing protein involved in ciliogenesis
Molecular
Reagents
less
  • All nucleic 18
    cDNA 18

    Microarray probesets 5
References
more
  • Summaries
    All 44
    Developmental Gene Expression 1
    Diseases 1
    Gene Ontology 3
    Phenotypes 22
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory