Sox5os3 MGI Mouse Gene Detail - MGI:1914010 - SRY (sex determining region Y)-box 5, opposite strand 3

Sequence Map

Chr6:144618594-144639558 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914010	antisense lncRNA gene	Chr6:144618594-144639560 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004388	antisense lncRNA gene	Chr6:149617007-149639204 (+)
A/J	MGP_AJ_G0004365	antisense lncRNA gene	Chr6:143711221-143732173 (+)
AKR/J	MGP_AKRJ_G0004347	antisense lncRNA gene	Chr6:147998934-148019883 (+)
BALB/cJ	MGP_BALBcJ_G0004351	antisense lncRNA gene	Chr6:143470671-143492622 (+)
C3H/HeJ	MGP_C3HHeJ_G0004300	antisense lncRNA gene	Chr6:148014696-148035745 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004501	antisense lncRNA gene	Chr6:153636320-153678804 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003961	antisense lncRNA gene	Chr6:142464089-142487892 (+)
CAST/EiJ	MGP_CASTEiJ_G0004260	antisense lncRNA gene	Chr6:147623773-147648501 (+)
CBA/J	MGP_CBAJ_G0004294	antisense lncRNA gene	Chr6:159504348-159527815 (+)
DBA/2J	MGP_DBA2J_G0004309	antisense lncRNA gene	Chr6:142511703-142532632 (+)
FVB/NJ	MGP_FVBNJ_G0004326	antisense lncRNA gene	Chr6:141252720-141273669 (+)
LP/J	MGP_LPJ_G0004388	antisense lncRNA gene	Chr6:149711392-149733229 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004317	antisense lncRNA gene	Chr6:163323327-163354564 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004498	antisense lncRNA gene	Chr6:147823784-147844752 (+)
PWK/PhJ	MGP_PWKPhJ_G0004213	antisense lncRNA gene	Chr6:141011564-141033266 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004155	antisense lncRNA gene	Chr6:145970532-145997431 (+)
WSB/EiJ	MGP_WSBEiJ_G0004299	antisense lncRNA gene	Chr6:148403752-148432022 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	66760	NCBI Gene Model \| MGI Sequence Detail	20965	C57BL/6J	± kb
	transcript	NR_040519	RefSeq \| MGI Sequence Detail	904	C57BL/6

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Summaries

All 9
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for Sox5os3:

(View these features in JBrowse)

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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