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Snhg18 Gene Detail
Summary
  • Symbol
    Snhg18
  • Name
    small nucleolar RNA host gene 18
  • Synonyms
    0610007N19Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1914085
    NCBI Gene: 100616095
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:32240714-32244808 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 13.02 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    215 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914085
 lncRNA gene Chr15:32240711-32244848 (-)
129S1/SvImJ MGP_129S1SvImJ_G0005587
 lincRNA gene Chr15:30542218-30546306 (-)
A/J MGP_AJ_G0005573
 lincRNA gene Chr15:29313424-29317521 (-)
AKR/J MGP_AKRJ_G0005552
 lincRNA gene Chr15:30057068-30061165 (-)
BALB/cJ MGP_BALBcJ_G0005554
 lincRNA gene Chr15:29308413-29312492 (-)
C3H/HeJ MGP_C3HHeJ_G0005501
 lincRNA gene Chr15:30082092-30086193 (-)
C57BL/6NJ MGP_C57BL6NJ_G0005711
 lincRNA gene Chr15:31730173-31734270 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0005077
 lincRNA gene Chr15:27357260-27361320 (-)
CAST/EiJ MGP_CASTEiJ_G0005444
 lincRNA gene Chr15:30573493-30577640 (-)
CBA/J MGP_CBAJ_G0005491
 lincRNA gene Chr15:32624819-32628920 (-)
DBA/2J MGP_DBA2J_G0005506
 lincRNA gene Chr15:29110575-29114676 (-)
FVB/NJ MGP_FVBNJ_G0005532
 lincRNA gene Chr15:28613375-28617472 (-)
LP/J MGP_LPJ_G0005590
 lincRNA gene Chr15:30428933-30433022 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0005517
 lincRNA gene Chr15:35616031-35620128 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0005711
 lincRNA gene Chr15:30286390-30290487 (-)
PWK/PhJ MGP_PWKPhJ_G0005394
 lincRNA gene Chr15:29256401-29260516 (-)
SPRET/EiJ MGP_SPRETEiJ_G0005312
 lincRNA gene Chr15:30064204-30068307 (-)
WSB/EiJ MGP_WSBEiJ_G0005494
 lincRNA gene Chr15:30264229-30268344 (-)



Homology
more
  • Human Ortholog
    SNHG18, small nucleolar RNA host gene 18
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SNHG18, small nucleolar RNA host gene 18
  • Links
    NCBI Gene ID: 100505806

  • Chr Location
    chr5:9546170-9550725 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    5
  • Chemically induced (other)
    2
  • Endonuclease-mediated
    3
  • Genomic Mutations
    2 involving Snhg18
  • Find Mice (IMSR)
    4 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    23
Sequences &
Gene Models
less
  • All Sequences
    32
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100616095 NCBI Gene Model | MGI Sequence Detail 4095 C57BL/6J ±  kb
transcript NR_038186 RefSeq | MGI Sequence Detail 1500 ZRU/MplStud  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 23
    cDNA 23

    Microarray probesets 4
References
more
  • Summaries
    All 19
    Phenotypes 7
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory