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Prpf38b Gene Detail
Summary
  • Symbol
    Prpf38b
  • Name
    PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
  • Synonyms
    1110021E09Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914171
    NCBI Gene: 66921
  • Alliance
    gene page
  • Transcription Start Sites
    21 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:108810121-108819043 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 47.92 cM, cytoband G1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    232 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914171
 protein coding gene Chr3:108810121-108819055 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027788
 protein coding gene Chr3:110486443-110497038 (-)
A/J MGP_AJ_G0027748
 protein coding gene Chr3:106979469-106991063 (-)
AKR/J MGP_AKRJ_G0027713
 protein coding gene Chr3:109586125-109597519 (-)
BALB/cJ MGP_BALBcJ_G0027760
 protein coding gene Chr3:106680331-106689405 (-)
C3H/HeJ MGP_C3HHeJ_G0027490
 protein coding gene Chr3:109937924-109948096 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028204
 protein coding gene Chr3:114587094-114596008 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025542
 protein coding gene Chr3:103103955-103112967 (-)
CAST/EiJ MGP_CASTEiJ_G0026946
 protein coding gene Chr3:109335891-109348947 (-)
CBA/J MGP_CBAJ_G0027465
 protein coding gene Chr3:118507987-118517139 (-)
DBA/2J MGP_DBA2J_G0027607
 protein coding gene Chr3:106148760-106158407 (-)
FVB/NJ MGP_FVBNJ_G0027575
 protein coding gene Chr3:104033922-104042840 (-)
LP/J MGP_LPJ_G0027714
 protein coding gene Chr3:111911223-111922087 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027605
 protein coding gene Chr3:124563221-124572120 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028259
 protein coding gene Chr3:109194778-109203775 (-)
PWK/PhJ MGP_PWKPhJ_G0026672
 protein coding gene Chr3:105908232-105917343 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026492
 protein coding gene Chr3:107331988-107340929 (-)
WSB/EiJ MGP_WSBEiJ_G0027026
 protein coding gene Chr3:109723736-109732635 (-)



Homology
more
  • Human Ortholog
    PRPF38B, pre-mRNA processing factor 38B
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PRPF38B, pre-mRNA processing factor 38B
  • Synonyms
    NET1
  • Links
    NCBI Gene ID: 55119
    neXtProt AC: NX_Q5VTL8
    UniProt: Q5VTL8

  • Chr Location
    1p13.3; chr1:108692310-108702928 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    732
  • Tissues
    13
  • cDNA Data
    13
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000027881 Ensembl Gene Model | MGI Sequence Detail 8923 C57BL/6J ±  kb
transcript ENSMUST00000029480 Ensembl | MGI Sequence Detail 3026 Not Applicable  
polypeptide ENSMUSP00000029480 Ensembl | MGI Sequence Detail 542 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 14
    cDNA 14

    Microarray probesets 8
Other
Accession IDs
less
MGI:2139876
References
more
  • Summaries
    All 35
    Developmental Gene Expression 2
    Diseases 1
    Gene Ontology 2
    Phenotypes 10
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory