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Trappc13 Gene Detail
Summary
  • Symbol
    Trappc13
  • Name
    trafficking protein particle complex 13
  • Synonyms
    2410002O22Rik, 2610524F24Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914225
    NCBI Gene: 66975
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr13:104278661-104314974 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 56.28 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1267 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914225
 protein coding gene Chr13:104278657-104314977 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020904
 protein coding gene Chr13:106230082-106269122 (-)
A/J MGP_AJ_G0020855
 protein coding gene Chr13:102097216-102133623 (-)
AKR/J MGP_AKRJ_G0020830
 protein coding gene Chr13:105208137-105243936 (-)
BALB/cJ MGP_BALBcJ_G0020855
 protein coding gene Chr13:102807111-102842571 (-)
C3H/HeJ MGP_C3HHeJ_G0020644
 protein coding gene Chr13:104939322-104979720 (-)
C57BL/6NJ MGP_C57BL6NJ_G0021289
 protein coding gene Chr13:109426166-109464389 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018859
 protein coding gene Chr13:97714233-97751144 (-)
CAST/EiJ MGP_CASTEiJ_G0020163
 protein coding gene Chr13:104405569-104445122 (-)
CBA/J MGP_CBAJ_G0020606
 protein coding gene Chr13:113669589-113713782 (-)
DBA/2J MGP_DBA2J_G0020730
 protein coding gene Chr13:101862496-101899164 (-)
FVB/NJ MGP_FVBNJ_G0020712
 protein coding gene Chr13:100561215-100597114 (-)
LP/J MGP_LPJ_G0020804
 protein coding gene Chr13:106254691-106294490 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020740
 protein coding gene Chr13:113838282-113878898 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0021328
 protein coding gene Chr13:104674601-104718025 (-)
PWK/PhJ MGP_PWKPhJ_G0019916
 protein coding gene Chr13:100596101-100633679 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019738
 protein coding gene Chr13:100865268-100914423 (-)
WSB/EiJ MGP_WSBEiJ_G0020221
 protein coding gene Chr13:105147577-105185599 (-)



Homology
more
  • Human Ortholog
    TRAPPC13, trafficking protein particle complex subunit 13
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAPPC13, trafficking protein particle complex subunit 13
  • Synonyms
    C5orf44, SHLD3
  • Links
    NCBI Gene ID: 80006
    neXtProt AC: NX_A5PLN9
    UniProt: A5PLN9

  • Chr Location
    5q12.3; chr5:65625004-65666233 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    91
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 66975 NCBI Gene Model | MGI Sequence Detail 36314 C57BL/6J ±  kb
transcript NM_025879 RefSeq | MGI Sequence Detail 3563 C57BL/6  
polypeptide Q3TIR1 UniProt | EBI | MGI Sequence Detail 417 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000060145 trafficking protein particle complex subunit 13
    (term hierarchy)
  • InterPro Domains
    IPR010378 Trafficking protein particle complex subunit 13
  • GlyGen
    Q3TIR1 1 site, 1 N-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 91
    cDNA 91

    Microarray probesets 8
Other
Accession IDs
less
MGI:1917155, MGI:2145247, MGI:2145341
References
more
  • Summaries
    All 29
    Gene Ontology 2
    Phenotypes 5
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:320033 Kim JJ, et al., TRAPP Complexes in Secretion and Autophagy. Front Cell Dev Biol. 2016;4:20
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory