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Yae1d1 Gene Detail
Summary
  • Symbol
    Yae1d1
  • Name
    Yae1 domain containing 1
  • Synonyms
    1600012F09Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914258
    NCBI Gene: 67008
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:18161225-18167936 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 6.05 cM, cytoband A3.1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    343 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914258
 protein coding gene Chr13:18155915-18167936 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020254
 protein coding gene Chr13:15055486-15064035 (-)
A/J MGP_AJ_G0020211
 protein coding gene Chr13:14863087-14869964 (-)
AKR/J MGP_AKRJ_G0020185
 protein coding gene Chr13:15051885-15071152 (-)
BALB/cJ MGP_BALBcJ_G0020197
 protein coding gene Chr13:14837354-14844065 (-)
C3H/HeJ MGP_C3HHeJ_G0026830
 protein coding gene Chr3:26302082-26304113 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020641
 protein coding gene Chr13:15774954-15781771 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018248
 protein coding gene Chr13:13367736-13374181 (-)
CAST/EiJ MGP_CASTEiJ_G0019535
 protein coding gene Chr13:14878304-14885023 (-)
CBA/J MGP_CBAJ_G0026808
 protein coding gene Chr3:28309622-28315416 (-)
DBA/2J MGP_DBA2J_G0026942
 protein coding gene Chr3:25464348-25467549 (-)
FVB/NJ MGP_FVBNJ_G0020065
 protein coding gene Chr13:14170721-14177550 (-)
LP/J MGP_LPJ_G0020154
 protein coding gene Chr13:15340825-15347715 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020103
 protein coding gene Chr13:16626210-16634900 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020669
 protein coding gene Chr13:14879098-14887057 (-)
PWK/PhJ MGP_PWKPhJ_G0019298
 protein coding gene Chr13:14518337-14526212 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019104
 protein coding gene Chr13:14006672-14013173 (-)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    YAE1, YAE1 maturation factor of ABCE1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    YAE1, YAE1 maturation factor of ABCE1
  • Synonyms
    C7orf36, CIAB2, GK003, YAE1D1
  • Links
    NCBI Gene ID: 57002
    neXtProt AC: NX_Q9NRH1
    UniProt: Q9NRH1

  • Chr Location
    7p14.1; chr7:39566385-39612089 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotypes from 1 allele in 1 genetic background
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    48
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 67008 NCBI Gene Model | MGI Sequence Detail 6712 C57BL/6J ±  kb
    transcript NM_025904 RefSeq | MGI Sequence Detail 3436 C57BL/6  
    polypeptide NP_080180 RefSeq | MGI Sequence Detail 216 C57BL/6  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      8 Sequences
    • InterPro Domains
      IPR019191 Essential protein Yae1, N-terminal
      IPR038881 Yae1-like
    Molecular
    Reagents
    less
    • All nucleic 48
      cDNA 48

      Microarray probesets 7
    References
    more
    • Summaries
      All 32
      Gene Ontology 1
      Phenotypes 11
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory