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Tm9sf3 Gene Detail
Summary
  • Symbol
    Tm9sf3
  • Name
    transmembrane 9 superfamily member 3
  • Synonyms
    1810073M23Rik, 2810031D16Rik, Smbp
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914262
    NCBI Gene: 107358
  • Alliance
    gene page
  • Transcription Start Sites
    12 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:41199283-41252436 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 19, 34.54 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1383 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914262
 protein coding gene Chr19:41199281-41252443 (-)
129S1/SvImJ MGP_129S1SvImJ_G0025121
 protein coding gene Chr19:40470294-40528384 (-)
A/J MGP_AJ_G0025098
 protein coding gene Chr19:38525649-38578849 (-)
AKR/J MGP_AKRJ_G0025066
 protein coding gene Chr19:39798008-39852537 (-)
BALB/cJ MGP_BALBcJ_G0025092
 protein coding gene Chr19:38577220-38630361 (-)
C3H/HeJ MGP_C3HHeJ_G0024852
 protein coding gene Chr19:39938941-39993009 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025536
 protein coding gene Chr19:41556621-41609813 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0022949
 protein coding gene Chr19:37890866-37945944 (-)
CAST/EiJ MGP_CASTEiJ_G0024317
 protein coding gene Chr19:39579756-39634659 (-)
CBA/J MGP_CBAJ_G0024832
 protein coding gene Chr19:43575494-43628673 (-)
DBA/2J MGP_DBA2J_G0024964
 protein coding gene Chr19:38387301-38440477 (-)
FVB/NJ MGP_FVBNJ_G0024925
 protein coding gene Chr19:38145062-38200378 (-)
LP/J MGP_LPJ_G0025050
 protein coding gene Chr19:40483416-40538914 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0024956
 protein coding gene Chr19:43227800-43283700 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0025593
 protein coding gene Chr19:39826411-39881265 (-)
PWK/PhJ MGP_PWKPhJ_G0024067
 protein coding gene Chr19:38241078-38295325 (-)
SPRET/EiJ MGP_SPRETEiJ_G0023870
 protein coding gene Chr19:38563007-38616590 (-)
WSB/EiJ MGP_WSBEiJ_G0024387
 protein coding gene Chr19:39997761-40051672 (-)



Homology
more
  • Human Ortholog
    TM9SF3, transmembrane 9 superfamily member 3
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TM9SF3, transmembrane 9 superfamily member 3
  • Synonyms
    EP70-P-iso, SMBP
  • Links
    NCBI Gene ID: 56889
    neXtProt AC: NX_Q9HD45
    UniProt: Q9HD45

  • Chr Location
    10q24.1; chr10:96518110-96587452 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotypes from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    741
  • Tissues
    19
  • cDNA Data
    299
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000025016 Ensembl Gene Model | MGI Sequence Detail 53154 C57BL/6J ±  kb
    transcript ENSMUST00000237871 Ensembl | MGI Sequence Detail 3170 Not Applicable  
    polypeptide ENSMUSP00000158318 Ensembl | MGI Sequence Detail 587 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 299
      cDNA 299

      Microarray probesets 7
    Other
    Accession IDs
    less
    MGI:1914471, MGI:2147477, MGI:2147517, MGI:2147714, MGI:2147744
    References
    more
    • Summaries
      All 33
      Developmental Gene Expression 2
      Gene Ontology 2
      Phenotypes 8
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:348683 Zhao R, et al., Comparative analysis of the expression patterns of TM9SF family members in mice. Gene Expr Patterns. 2024 May 6;52:119366
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory