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Pmf1 Gene Detail
Summary
  • Symbol
    Pmf1
  • Name
    polyamine-modulated factor 1
  • Synonyms
    2600009M07Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914287
    NCBI Gene: 67037
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:88301450-88317638 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 38.82 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    567 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914287
 protein coding gene Chr3:88301445-88317752 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027395
 protein coding gene Chr3:88550545-88566715 (-)
A/J MGP_AJ_G0027359
 protein coding gene Chr3:85568701-85584865 (-)
AKR/J MGP_AKRJ_G0027323
 protein coding gene Chr3:87671147-87687316 (-)
BALB/cJ MGP_BALBcJ_G0027368
 protein coding gene Chr3:85648100-85664290 (-)
C3H/HeJ MGP_C3HHeJ_G0027110
 protein coding gene Chr3:87933467-87950161 (-)
C57BL/6NJ MGP_C57BL6NJ_G0027814
 protein coding gene Chr3:91848891-91865071 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025166
 protein coding gene Chr3:81157138-81174832 (-)
CAST/EiJ MGP_CASTEiJ_G0026556
 protein coding gene Chr3:88162157-88181165 (-)
CBA/J MGP_CBAJ_G0027084
 protein coding gene Chr3:94989526-95009125 (-)
DBA/2J MGP_DBA2J_G0027222
 protein coding gene Chr3:85045227-85062163 (-)
FVB/NJ MGP_FVBNJ_G0027190
 protein coding gene Chr3:83317084-83333237 (-)
LP/J MGP_LPJ_G0027331
 protein coding gene Chr3:89564929-89581199 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027210
 protein coding gene Chr3:101230225-101247648 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0027873
 protein coding gene Chr3:87422639-87438810 (-)
PWK/PhJ MGP_PWKPhJ_G0026290
 protein coding gene Chr3:84824555-84841714 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026109
 protein coding gene Chr3:86596983-86613171 (-)
WSB/EiJ MGP_WSBEiJ_G0026638
 protein coding gene Chr3:87770385-87790193 (-)



Homology
more
  • Human Ortholog
    PMF1, polyamine modulated factor 1
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PMF1, polyamine modulated factor 1
  • Links
    NCBI Gene ID: 11243
    neXtProt AC: NX_Q6P1K2
    UniProt: Q6P1K2

  • Chr Location
    1q22; chr1:156212993-156240042 (+)  GRCh38
  • Human Ortholog
    PMF1-BGLAP, PMF1-BGLAP readthrough
  • Synonyms
    PMF-1, PMF1
  • Links
    NCBI Gene ID: 100527963
    neXtProt AC: NX_Q6P1K2

  • Chr Location
    1q22; chr1:156212982-156243332 (+)  GRCh38
Human Diseases
more
  • Diseases
    2 with human PMF1 associations

Human Disease Mouse Models
      
IDs
IDs
Click on a disease name to see all genes associated with that disease.

  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    23
  • GO References
    9
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    826
  • Tissues
    112
  • cDNA Data
    71
  • Literature Summary
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028066 Ensembl Gene Model | MGI Sequence Detail 16189 C57BL/6J ±  kb
transcript ENSMUST00000056370 Ensembl | MGI Sequence Detail 1007 Not Applicable  
polypeptide ENSMUSP00000062420 Ensembl | MGI Sequence Detail 202 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 74
    cDNA 72
    Primer pair 2

    Microarray probesets 3
Other
Accession IDs
less
MGI:2139858, MGI:2139964
References
more
  • Summaries
    All 41
    Developmental Gene Expression 5
    Diseases 1
    Gene Ontology 9
    Phenotypes 9
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory