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Herc6 Gene Detail
Summary
  • Symbol
    Herc6
  • Name
    hect domain and RLD 6
  • Synonyms
    1700121D12Rik, 2510038N07Rik, 4930427L17Rik, CEB1, Herc5
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914388
    NCBI Gene: 67138
  • Alliance
    gene page
  • Transcription Start Sites
    34 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:57557985-57641617 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 27.82 cM, cytoband C1
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1966 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914388
 protein coding gene Chr6:57557977-57642121 (+)
129S1/SvImJ MGP_129S1SvImJ_G0030801
 protein coding gene Chr6:57102581-57181692 (+)
A/J MGP_AJ_G0030773
 protein coding gene Chr6:54491736-54572427 (+)
AKR/J MGP_AKRJ_G0030697
 protein coding gene Chr6:56338838-56417391 (+)
BALB/cJ MGP_BALBcJ_G0030784
 protein coding gene Chr6:54885604-54960523 (+)
C3H/HeJ MGP_C3HHeJ_G0030497
 protein coding gene Chr6:56408980-56489087 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031239
 protein coding gene Chr6:58398747-58487067 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028444
 protein coding gene Chr6:52515897-52586443 (-)
CAST/EiJ MGP_CASTEiJ_G0029893
 protein coding gene Chr6:56146460-56219324 (+)
CBA/J MGP_CBAJ_G0030468
 protein coding gene Chr6:60835108-60915183 (+)
DBA/2J MGP_DBA2J_G0030619
 protein coding gene Chr6:54354790-54431530 (+)
FVB/NJ MGP_FVBNJ_G0030572
 protein coding gene Chr6:53946046-54019404 (+)
LP/J MGP_LPJ_G0030704
 protein coding gene Chr6:57044228-57119604 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030606
 protein coding gene Chr6:63266838-63363975 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031264
 protein coding gene Chr6:56286909-56368633 (+)
PWK/PhJ MGP_PWKPhJ_G0029611
 protein coding gene Chr6:54073297-54146871 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029438
 protein coding gene Chr6:55557436-55631366 (+)
WSB/EiJ MGP_WSBEiJ_G0029974
 protein coding gene Chr6:56352328-56437222 (+)



Homology
more
  • Human Ortholog
    HERC6, HECT and RLD domain containing E3 ubiquitin protein ligase family member 6
  • Vertebrate Orthologs
    6
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    HERC6, HECT and RLD domain containing E3 ubiquitin protein ligase family member 6
  • Links
    NCBI Gene ID: 55008
    neXtProt AC: NX_Q8IVU3
    UniProt: Q8IVU3

  • Chr Location
    4q22.1; chr4:88378739-88443097 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotypes from 2 alleles in 2 genetic backgrounds
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele exhibit enlarged seminal vesicles but do not show any abnormal responses to Sendai virus or vesicular stomatitis virus infection or to IFN stimulation.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    15
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    713
  • Tissues
    2
  • cDNA Data
    47
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000029798 Ensembl Gene Model | MGI Sequence Detail 83633 C57BL/6J ±  kb
    transcript ENSMUST00000031817 Ensembl | MGI Sequence Detail 4767 Not Applicable  
    polypeptide ENSMUSP00000031817 Ensembl | MGI Sequence Detail 1003 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      5 Sequences
    • Protein Ontology
      PR:000029542 probable E3 ubiquitin-protein ligase HERC6
      (term hierarchy)
    • EC
      2.3.2.-
    • InterPro Domains
      IPR000569 HECT domain
      IPR035983 HECT, E3 ligase catalytic domain
      IPR052830 RCC1 domain-containing protein
      IPR009091 Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
      IPR000408 Regulator of chromosome condensation, RCC1
      IPR051210 Ubiquitin ligases and GEF domain-containing protein
      IPR051709 Ubiquitin ligases and GTPase regulators
    Molecular
    Reagents
    less
    • All nucleic 49
      cDNA 47
      Primer pair 2

      Microarray probesets 9
    Other
    Accession IDs
    less
    MGI:1889836, MGI:1921562, MGI:1921870
    References
    more
    • Summaries
      All 45
      Developmental Gene Expression 2
      Gene Ontology 8
      Phenotypes 7
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:350953 Qin Y, et al., ISGylation by HERCs facilitates STING activation. Cell Rep. 2024 May 28;43(5):114135
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/05/2024
    MGI 6.24     		The Jackson Laboratory